MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-598

Family name MIR-598 (all species)
Seed ACGUCAU
Species Guinea pig (Cavia porcellus)
MiRBase ID
Paralogues
Orthologues Ete-Mir-598  Hsa-Mir-598  Mml-Mir-598  Mmu-Mir-598  Rno-Mir-598-P1  Rno-Mir-598-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_1: 65539782-65539840 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAAGAUGGUUUGACGAUGCUGCUGAUGCUGGCGGUGACGCCGAUGGUGCGAGCUGGACAUGGGGUGCUACGUCAUCGUUGUCAUCGUCAUCAUCAUCAUCAGAGCAGCCACUGGACAGC
Get precursor sequence
Structure
        10          20        30        40        50          
GAAGAUGGUUUGACGAU--|C  C     C           C     GU   -   UGGAC 
                   G UG UGAUG UGGCGGUGACG CGAUG  GCG AGC     A
                   C AC ACUAC ACUGCUACUGU GCUAC  UGC UCG     U
CGACAGGUCACCGACGAGA^U  U     U           U     --   A   UGGGG 
       110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cpo-Mir-598_5p* (predicted)

mirBase accessionNone
Sequence
0- GCGGUGACGCCGAUGGUGCGAGC -23
Get sequence
Mature sequence

Cpo-Mir-598_3p

mirBase accessionNone
Sequence
37- UACGUCAUCGUUGUCAUCGUCA -59
Get sequence