| MirGeneDB ID | Ete-Mir-598 |
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| Family name |
MIR-598 (all species) |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Cja-Mir-598
Cpo-Mir-598
Hsa-Mir-598
Laf-Mir-598
Mml-Mir-598
Mmr-Mir-598
Mmu-Mir-598
Pab-Mir-598
Rno-Mir-598-P1
Rno-Mir-598-P2
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(echTel2) |
JH980320: 20285247-20285304 [-]
UCSC
|
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| Seed |
ACGUCAU |
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Precursor
(pre-Mir +30nt flank) |
GAAGAUGGUUUGAUGAUACUGCUGAUGCUGGUGGUGAUGCCGAUGGUGUGAGCUGGAAAUGGGUGCUACGUCAUCGUUGUCAUCGUCGUCAUCAUCAUCCGAGCAGCCACCGUGUAGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAAGAUGGUUUGAUGAUAC--| C C GU GC GU G UGGAA
UG UGAUG UG GGUGAU CGAUG GU AGC \
AC ACUAC GC CUACUG GCUAC CA UCG A
CGAUGUGCCACCGACGAGCCU^ U U UG UU UG - UGGGU
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| Comment | There are two nt differences between the genomic read and the actual 3p read from the small RNA library (UACGUCAUCGUUGUCAUUGUCA). |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ete-Mir-598_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GUGGUGAUGCCGAUGGUGUGAGC -23
Get sequence
|
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| Mature sequence |
Ete-Mir-598_3p |
| mirBase accession | None |
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| Sequence |
36- UACGUCAUCGUUGUCAUCGUCG -58
Get sequence
|
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