| MirGeneDB ID | Cja-Mir-598 |
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| Family name |
MIR-598 (all species) |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Cpo-Mir-598
Ete-Mir-598
Hsa-Mir-598
Laf-Mir-598
Mml-Mir-598
Mmr-Mir-598
Mmu-Mir-598
Pab-Mir-598
Rno-Mir-598-P1
Rno-Mir-598-P2
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021927.1: 7905371-7905429 [+]
UCSC
Ensembl
|
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| Seed |
ACGUCAU |
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Precursor
(pre-Mir +30nt flank) |
GAAGAUGGCUUGAUGAUGCUGCUGAUGCUGGCGGUGAUGCCGAUGGUGUGAGCUGGAAAUGGGGUGCUACGUCAUCGUUGUCAUCGUCAUCAUCAUCAUCCGAGCAGCCACCAGAUAGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAAGAUGGCUUGAUGAUGC--| C C GC GU G UGGAA
UG UGAUG UGGCGGUGAU CGAUG GU AGC A
AC ACUAC ACUGCUACUG GCUAC CA UCG U
CGAUAGACCACCGACGAGCCU^ U U UU UG - UGGGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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|
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| Star sequence |
Cja-Mir-598_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GCGGUGAUGCCGAUGGUGUGAGC -23
Get sequence
|
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| Mature sequence |
Cja-Mir-598_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UACGUCAUCGUUGUCAUCGUCA -59
Get sequence
|
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