MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-430-P40b

Family name

MIR-430 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-430-P1 Pab-Mir-430-P2 Pab-Mir-430-P3 Pab-Mir-430-P4 Pab-Mir-430-P5 Pab-Mir-430-P6 Pab-Mir-430-P7 Pab-Mir-430-P8 Pab-Mir-430-P9a Pab-Mir-430-P9b Pab-Mir-430-P10 Pab-Mir-430-P11 Pab-Mir-430-P12a Pab-Mir-430-P12b Pab-Mir-430-P13 Pab-Mir-430-P14 Pab-Mir-430-P15 Pab-Mir-430-P16 Pab-Mir-430-P17 Pab-Mir-430-P18 Pab-Mir-430-P19 Pab-Mir-430-P20 Pab-Mir-430-P21 Pab-Mir-430-P22 Pab-Mir-430-P23 Pab-Mir-430-P24 Pab-Mir-430-P27 Pab-Mir-430-P28 Pab-Mir-430-P29a Pab-Mir-430-P29b Pab-Mir-430-P29c Pab-Mir-430-P30 Pab-Mir-430-P31a Pab-Mir-430-P31b Pab-Mir-430-P32 Pab-Mir-430-P33a Pab-Mir-430-P33b Pab-Mir-430-P34a Pab-Mir-430-P34b Pab-Mir-430-P36 Pab-Mir-430-P37a Pab-Mir-430-P37b Pab-Mir-430-P37c Pab-Mir-430-P38 Pab-Mir-430-P39 Pab-Mir-430-P40a Pab-Mir-430-P41a Pab-Mir-430-P41b

Orthologues

Gja-Mir-430-o40 Hsa-Mir-430-P40b

Node of Origin (locus)

Hominidae

Node of Origin (family)

Vertebrata

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054699.2: 60128764-60128824 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P40b)

Mir-430-P24 CM054699.2: 60080167-60080225 [+] UCSC Ensembl
Mir-430-P22 CM054699.2: 60083737-60083795 [+] UCSC Ensembl
Mir-430-P27 CM054699.2: 60086239-60086297 [+] UCSC Ensembl
Mir-430-P28 CM054699.2: 60088126-60088184 [+] UCSC Ensembl
Mir-430-P29a CM054699.2: 60089389-60089449 [+] UCSC Ensembl
Mir-430-P30 CM054699.2: 60090468-60090529 [+] UCSC Ensembl
Mir-430-P31a CM054699.2: 60093779-60093844 [+] UCSC Ensembl
Mir-430-P32 CM054699.2: 60095726-60095785 [+] UCSC Ensembl
Mir-430-P29b CM054699.2: 60096688-60096746 [+] UCSC Ensembl
Mir-430-P33a CM054699.2: 60097783-60097842 [+] UCSC Ensembl
Mir-430-P34a CM054699.2: 60101023-60101085 [+] UCSC Ensembl
Mir-430-P36 CM054699.2: 60104383-60104441 [+] UCSC Ensembl
Mir-430-P37a CM054699.2: 60105579-60105637 [+] UCSC Ensembl
Mir-430-P38 CM054699.2: 60109482-60109540 [+] UCSC Ensembl
Mir-430-P34b CM054699.2: 60111454-60111516 [+] UCSC Ensembl
Mir-430-P37b CM054699.2: 60113972-60114030 [+] UCSC Ensembl
Mir-430-P29c CM054699.2: 60115975-60116033 [+] UCSC Ensembl
Mir-430-P33b CM054699.2: 60117180-60117239 [+] UCSC Ensembl
Mir-430-P31b CM054699.2: 60123298-60123358 [+] UCSC Ensembl
Mir-430-P39 CM054699.2: 60127563-60127622 [+] UCSC Ensembl
Mir-430-P40a CM054699.2: 60128764-60128824 [+] UCSC Ensembl
Mir-430-P40b CM054699.2: 60128764-60128824 [+] UCSC Ensembl
Mir-430-P37c CM054699.2: 60130340-60130399 [+] UCSC Ensembl
Mir-430-P41a CM054699.2: 60132457-60132520 [+] UCSC Ensembl
Mir-430-P41b CM054699.2: 60136864-60136927 [+] UCSC Ensembl
Mir-430-P5 CM054699.2: 60165981-60166039 [+] UCSC Ensembl
Mir-430-P6 CM054699.2: 60166193-60166251 [+] UCSC Ensembl
Mir-430-P7 CM054699.2: 60167226-60167286 [+] UCSC Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

UGCUGGAGCAAGAAGAUCUCAGGCUGUGACACUCUAGAGGGAAGCACUUUCUGUUUUCUGAAAGAAAGGAAAGUGCAUCCUUUUAGAGUGUUACUGUUUGAGAAAAAGCAACGUUGAAGCU

Get precursor sequence

Structure

        10          20        30        40        50          
UGCUGGAGCAAGAAGAU--|      U                 A         GUUUUCU 
                   CUCAGGC GUGACACUCUAGAGGGA GCACUUUCU       \
                   GAGUUUG CAUUGUGAGAUUUUCCU CGUGAAAGG       G
UCGAAGUUGCAACGAAAAA^      U                 A         AAAGAAA 
 .       110       100        90        80        70

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Br	Br	Li	Li

Mature sequence

Pab-Mir-430-P40b_5p (predicted)

mirBase accession

None

Sequence

0- ACUCUAGAGGGAAGCACUUUCU -22

Get sequence

Star sequence

Pab-Mir-430-P40b_3p* (predicted)

mirBase accession

None

Sequence

39- AAAGUGCAUCCUUUUAGAGUGU -61

Get sequence