MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-430-P30

Family name

MIR-430 (all species)

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-430-P1 Pab-Mir-430-P2 Pab-Mir-430-P3 Pab-Mir-430-P4 Pab-Mir-430-P5 Pab-Mir-430-P6 Pab-Mir-430-P7 Pab-Mir-430-P8 Pab-Mir-430-P9a Pab-Mir-430-P9b Pab-Mir-430-P10 Pab-Mir-430-P11 Pab-Mir-430-P12a Pab-Mir-430-P12b Pab-Mir-430-P13 Pab-Mir-430-P14 Pab-Mir-430-P15 Pab-Mir-430-P16 Pab-Mir-430-P17 Pab-Mir-430-P18 Pab-Mir-430-P19 Pab-Mir-430-P20 Pab-Mir-430-P21 Pab-Mir-430-P22 Pab-Mir-430-P23 Pab-Mir-430-P24 Pab-Mir-430-P27 Pab-Mir-430-P28 Pab-Mir-430-P29a Pab-Mir-430-P29b Pab-Mir-430-P29c Pab-Mir-430-P31a Pab-Mir-430-P31b Pab-Mir-430-P32 Pab-Mir-430-P33a Pab-Mir-430-P33b Pab-Mir-430-P34a Pab-Mir-430-P34b Pab-Mir-430-P36 Pab-Mir-430-P37a Pab-Mir-430-P37b Pab-Mir-430-P37c Pab-Mir-430-P38 Pab-Mir-430-P39 Pab-Mir-430-P40a Pab-Mir-430-P40b Pab-Mir-430-P41a Pab-Mir-430-P41b

Orthologues

Hsa-Mir-430-P30 Mml-Mir-430-P30

Node of Origin (locus)

Catarrhini

Node of Origin (family)

Vertebrata

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054699.2: 60090468-60090529 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P30)

Mir-430-P8 CM054699.2: 60047022-60047079 [+] UCSC Ensembl
Mir-430-P9a CM054699.2: 60048466-60048521 [+] UCSC Ensembl
Mir-430-P9b CM054699.2: 60048466-60048521 [+] UCSC Ensembl
Mir-430-P10 CM054699.2: 60050689-60050748 [+] UCSC Ensembl
Mir-430-P11 CM054699.2: 60052166-60052226 [+] UCSC Ensembl
Mir-430-P12a CM054699.2: 60056117-60056175 [+] UCSC Ensembl
Mir-430-P13 CM054699.2: 60057060-60057121 [+] UCSC Ensembl
Mir-430-P14 CM054699.2: 60059251-60059311 [+] UCSC Ensembl
Mir-430-P12b CM054699.2: 60062389-60062447 [+] UCSC Ensembl
Mir-430-P15 CM054699.2: 60063854-60063910 [+] UCSC Ensembl
Mir-430-P16 CM054699.2: 60065871-60065929 [+] UCSC Ensembl
Mir-430-P17 CM054699.2: 60068244-60068302 [+] UCSC Ensembl
Mir-430-P18 CM054699.2: 60071752-60071810 [+] UCSC Ensembl
Mir-430-P19 CM054699.2: 60072570-60072629 [+] UCSC Ensembl
Mir-430-P20 CM054699.2: 60074951-60075010 [+] UCSC Ensembl
Mir-430-P21 CM054699.2: 60075801-60075859 [+] UCSC Ensembl
Mir-430-P23 CM054699.2: 60078632-60078692 [+] UCSC Ensembl
Mir-430-P24 CM054699.2: 60080167-60080225 [+] UCSC Ensembl
Mir-430-P22 CM054699.2: 60083737-60083795 [+] UCSC Ensembl
Mir-430-P27 CM054699.2: 60086239-60086297 [+] UCSC Ensembl
Mir-430-P28 CM054699.2: 60088126-60088184 [+] UCSC Ensembl
Mir-430-P29a CM054699.2: 60089389-60089449 [+] UCSC Ensembl
Mir-430-P30 CM054699.2: 60090468-60090529 [+] UCSC Ensembl
Mir-430-P31a CM054699.2: 60093779-60093844 [+] UCSC Ensembl
Mir-430-P32 CM054699.2: 60095726-60095785 [+] UCSC Ensembl
Mir-430-P29b CM054699.2: 60096688-60096746 [+] UCSC Ensembl
Mir-430-P33a CM054699.2: 60097783-60097842 [+] UCSC Ensembl
Mir-430-P34a CM054699.2: 60101023-60101085 [+] UCSC Ensembl
Mir-430-P36 CM054699.2: 60104383-60104441 [+] UCSC Ensembl
Mir-430-P37a CM054699.2: 60105579-60105637 [+] UCSC Ensembl
Mir-430-P38 CM054699.2: 60109482-60109540 [+] UCSC Ensembl
Mir-430-P34b CM054699.2: 60111454-60111516 [+] UCSC Ensembl
Mir-430-P37b CM054699.2: 60113972-60114030 [+] UCSC Ensembl
Mir-430-P29c CM054699.2: 60115975-60116033 [+] UCSC Ensembl
Mir-430-P33b CM054699.2: 60117180-60117239 [+] UCSC Ensembl
Mir-430-P31b CM054699.2: 60123298-60123358 [+] UCSC Ensembl
Mir-430-P39 CM054699.2: 60127563-60127622 [+] UCSC Ensembl
Mir-430-P40b CM054699.2: 60128764-60128824 [+] UCSC Ensembl
Mir-430-P40a CM054699.2: 60128764-60128824 [+] UCSC Ensembl
Mir-430-P37c CM054699.2: 60130340-60130399 [+] UCSC Ensembl
Mir-430-P41a CM054699.2: 60132457-60132520 [+] UCSC Ensembl
Mir-430-P41b CM054699.2: 60136864-60136927 [+] UCSC Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

UGCUGGAGCGAGAAGAUCUCAUGCUGUGACCCUCCAAAGGGAAGCACUUCCUGUUUGUUUUCUCUUCAACAAAGUGCCUCCCUUUAGAGUGUUACCGUUUGGGAAAAGCCACGUUGAAGAUG

Get precursor sequence

Structure

        10          20        30        40        50        60 
UGCUGGAGCGAGAAGAU--|   U  U     C   C       A      CC   UUGUUU 
                   CUCA GC GUGAC CUC AAAGGGA GCACUU  UGU      U
                   GGGU UG CAUUG GAG UUUCCCU CGUGAA  ACA      C
GUAGAAGUUGCACCGAAAA^   U  C     U   A       C      --   ACUUCU 
120       110       100        90        80          70

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Br	Br	Li	Li

Star sequence

Pab-Mir-430-P30_5p* (predicted)

mirBase accession

None

Sequence

0- CCUCCAAAGGGAAGCACUUCCUGU -24

Get sequence

Mature sequence

Pab-Mir-430-P30_3p (predicted)

mirBase accession

None

Sequence

39- CAAAGUGCCUCCCUUUAGAGUGU -62

Get sequence