MirGeneDB ID | Ocu-Mir-6715 |
Family name |
MIR-6715 (all species) |
Seed |
CAGGCAC |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-6715
Cfa-Mir-6715
Cpo-Mir-6715
Ete-Mir-6715
Hsa-Mir-6715
Mml-Mir-6715
Mmu-Mir-6715
Rno-Mir-6715
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chr18: 59957230-59957286 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCCAAUGCCUGACGCUCUGGGCUGCGUCCACAGGCACGGCCGGUUUGAGCAUUUUGACUGAAUUGCCAAACCAGGUGUGCCUGUGGGCACAACCUUCGCCUGCUCCUCGAAUCUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCCCAAUGCCUGACGCUCU--| C C G - A UUUUG
GGG UG GUCCACAGGCACG CC GGUUUG GCA A
UCC AC CGGGUGUCCGUGU GG CCAAAC CGU C
CUUCUAAGCUCCUCGUCCGCU^ A A - A - UAAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-6715_5p |
mirBase accession | None |
Sequence |
0- ACAGGCACGGCCGGUUUGAGCA -22
Get sequence
|
Star sequence |
Ocu-Mir-6715_3p* (predicted) |
mirBase accession | None |
Sequence |
36- CCAAACCAGGUGUGCCUGUGG -57
Get sequence
|