MirGeneDB ID | Cpo-Mir-6715 |
Family name |
MIR-6715 (all species) |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Bta-Mir-6715
Cfa-Mir-6715
Cja-Mir-6715
Eca-Mir-6715
Ete-Mir-6715
Hsa-Mir-6715
Laf-Mir-6715
Mml-Mir-6715
Mmr-Mir-6715
Mmu-Mir-6715
Ocu-Mir-6715
Pab-Mir-6715
Rno-Mir-6715
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_11: 3327782-3327838 [-]
UCSC
|
Seed |
CAAACCA |
Precursor (pre-Mir +30nt flank) |
UUCCGUGGUUGCCUGCACUGGGCUGUGUUCACAGGCACGGCCGGUUUGAGCAUUUUCACUGAAUUGCCAAACCAGGCGUGCCUGUGGCCACAACUCUCACCUGCGCCCGCCGAGUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCCGUGGUUGCCUGCACU--| C UU G - A UUUUC
GGG UGUG CACAGGCACG CC GGUUUG GCA A
CUC ACAC GUGUCCGUGC GG CCAAAC CGU C
UCUGAGCCGCCCGCGUCCACU^ A CG - A - UAAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Star sequence |
Cpo-Mir-6715_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACAGGCACGGCCGGUUUGAGCA -22
Get sequence
|
Mature sequence |
Cpo-Mir-6715_3p |
mirBase accession | None |
Sequence |
36- CCAAACCAGGCGUGCCUGUGG -57
Get sequence
|