| MirGeneDB ID | Eca-Mir-6715 |
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| Family name |
MIR-6715 (all species) |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-6715
Cfa-Mir-6715
Cja-Mir-6715
Cpo-Mir-6715
Ete-Mir-6715
Hsa-Mir-6715
Laf-Mir-6715
Mml-Mir-6715
Mmr-Mir-6715
Mmu-Mir-6715
Ocu-Mir-6715
Pab-Mir-6715
Rno-Mir-6715
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009148.1: 19423680-19423736 [-]
UCSC
Ensembl
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| Seed |
CAAACCA |
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Precursor
(pre-Mir +30nt flank) |
AAAUGGCUGAGUUCUCUAUGGGCUGCGUCCACAGGCACAGCCAGUUUGAGCAUGUUAACUAAAUUGCCAAACCAGUCCUGCCUGUAAACACAGCCUUUACCCGCAACUGGAGUCUUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAAUGGCUGAGUUCUCUAU--| C CC CA CA A UGUUA
GGGCUG GU ACAGGCA GC GUUUG GCA A
UCCGAC CA UGUCCGU UG CAAAC CGU C
CUUCUGAGGUCAACGCCCAUU^ A AA CC AC - UAAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-6715_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- ACAGGCACAGCCAGUUUGAGCA -22
Get sequence
|
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| Mature sequence |
Eca-Mir-6715_3p (predicted) |
| mirBase accession | None |
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| Sequence |
36- CCAAACCAGUCCUGCCUGUAA -57
Get sequence
|
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