MirGeneDB ID | Cfa-Mir-6715 |
Family name |
MIR-6715 (all species) |
Species |
Dog (Canis familiaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-6715
Cja-Mir-6715
Cpo-Mir-6715
Eca-Mir-6715
Ete-Mir-6715
Hsa-Mir-6715
Laf-Mir-6715
Mml-Mir-6715
Mmr-Mir-6715
Mmu-Mir-6715
Ocu-Mir-6715
Pab-Mir-6715
Rno-Mir-6715
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (canFam3_add) |
chr28: 23373855-23373911 [+]
UCSC
Ensembl
|
Seed |
CAGGCAC |
Precursor (pre-Mir +30nt flank) |
CAGAGGUUGAAUUCACUCUGGGCUGCGUCCACAGGCACAGCCGCUUUGAGCAUUUUCACUGAAUUGCCAAACCAGUUGUGCCUGUAGACACUACCCUCACCUGCGACUCAAGGCUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGAGGUUGAAUUCACUCU--| CUGC C CGC A UUUUC
GGG GUC ACAGGCACAGC UUUG GCA A
CCC CAG UGUCCGUGUUG AAAC CGU C
CUUCGGAACUCAGCGUCCACU^ AUCA A ACC - UAAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Mature sequence |
Cfa-Mir-6715_5p |
mirBase accession | None |
Sequence |
0- ACAGGCACAGCCGCUUUGAGCA -22
Get sequence
|
Co-mature sequence |
Cfa-Mir-6715_3p |
mirBase accession | None |
Sequence |
36- CCAAACCAGUUGUGCCUGUAG -57
Get sequence
|