| MirGeneDB ID | Ocu-Mir-448 |
|---|
| Family name |
MIR-448 (all species) |
|---|
| Seed |
UGCAUAU |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
ocu-mir-448
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-448
Cfa-Mir-448
Cpo-Mir-448
Ete-Mir-448
Hsa-Mir-448
Mml-Mir-448
Mmu-Mir-448
Rno-Mir-448
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(oryCun2_add) |
chrX: 63272622-63272701 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCAGUUAACCUUCACAUGGGCAGGAAGGUUGAACAUCCUGCAUAGUGCUGCCAAGAAAUCCCUAUUUCAUACCAAGAGGGGGCUGGCUGGUUGCAUAUGUAGGAUGUCCCAUCUCCCAGCCCACUUCAUCAUGCCAGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
GCAGUUAACCUUCACAU-| A A UGA G U AAGAAAUCCCUAUUUCA
GGGC GG AGGU ACAUCCUGCAUA UGC GCC U
CCCG CC UCUA UGUAGGAUGUAU ACG UGG A
ACAGACCGUACUACUUCA^ A C CCC - U UCGGUCGGGGGAGAACC
. 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ocu-Mir-448_5p* (predicted) |
| mirBase accession | MIMAT0048451 |
|---|
| Sequence |
0- GAACAUCCUGCAUAGUGCUGCC -22
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-448_3p |
| mirBase accession | MIMAT0048452 |
|---|
| Sequence |
60- UUGCAUAUGUAGGAUGUCCC -80
Get sequence
|
|---|
