MirGeneDB ID | Ocu-Mir-448 |
Family name |
MIR-448 (all species) |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-448
|
Paralogues |
|
Orthologues |
Bta-Mir-448
Cfa-Mir-448
Cja-Mir-448
Cpo-Mir-448
Eca-Mir-448
Ete-Mir-448
Hsa-Mir-448
Laf-Mir-448
Mml-Mir-448
Mmr-Mir-448
Mmu-Mir-448
Pab-Mir-448
Rno-Mir-448
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chrX: 63272622-63272701 [+]
UCSC
Ensembl
|
Seed |
UGCAUAU |
Precursor (pre-Mir +30nt flank) |
GCAGUUAACCUUCACAUGGGCAGGAAGGUUGAACAUCCUGCAUAGUGCUGCCAAGAAAUCCCUAUUUCAUACCAAGAGGGGGCUGGCUGGUUGCAUAUGUAGGAUGUCCCAUCUCCCAGCCCACUUCAUCAUGCCAGACA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GCAGUUAACCUUCACAU-| A A UGA G U AAGAAAUCCCUAUUUCA
GGGC GG AGGU ACAUCCUGCAUA UGC GCC U
CCCG CC UCUA UGUAGGAUGUAU ACG UGG A
ACAGACCGUACUACUUCA^ A C CCC - U UCGGUCGGGGGAGAACC
. 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ocu-Mir-448_5p* (predicted) |
mirBase accession | MIMAT0048451 |
Sequence |
0- GAACAUCCUGCAUAGUGCUGCC -22
Get sequence
|
Mature sequence |
Ocu-Mir-448_3p |
mirBase accession | MIMAT0048452 |
Sequence |
60- UUGCAUAUGUAGGAUGUCCC -80
Get sequence
|