| MirGeneDB ID | Npo-Mir-92-o50 |
|---|---|
| Family name | MIR-92 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | Npo-Mir-92-o48 Npo-Mir-92-o49 |
| Orthologues | Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92 |
| Node of Origin (locus) | N. pompilius |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_018389105_NPO) |
JACATO010000364.1: 528075-528134 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-92-o50) |
Mir-92-o48
JACATO010000364.1: 507045-507103 [+]
Ensembl
Mir-92-o49 JACATO010000364.1: 514428-514486 [+] Ensembl Mir-92-o50 JACATO010000364.1: 528075-528134 [+] Ensembl |
| Seed | AUUGCAC |
| Precursor (pre-Mir +30nt flank) |
AAGCUUGAGAAUGAUGACGUAUCGACAUUUAGGUCGUGACGGUUUGCAAUUUUGGUGAACAUCACGCAAAUUGCACUCGUCCCGGCCUGCAUGAGUACGAUUGGCAUCAGUGCCCUCUGUGet precursor sequence |
| Structure | 10 20 30 40 50 AAGCUUGAGAAUGAUGA----| CGA U U UU UGGUGAA CGUAU CAU UAGGUCG GACGG UGCAAUUU \ GCAUG GUA GUCCGGC CUGCU ACGUUAAA C UGUCUCCCGUGACUACGGUUA^ A-- C C C- CGCACUA . 110 100 90 80 70 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Npo-Mir-92-o50_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGUCGUGACGGUUUGCAAUUUU -23
Get sequence
|
| Mature sequence | Npo-Mir-92-o50_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- AAUUGCACUCGUCCCGGCCUGC -60
Get sequence
|
