MirGeneDB ID | Npo-Mir-92-o50 |
---|---|
Family name | MIR-92 (all species) |
Seed | AUUGCAC |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-92-o48 Npo-Mir-92-o49 |
Orthologues | Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92 |
Node of Origin (locus) | N. pompilius |
Node of Origin (family) | Bilateria |
Genome context (GCA_018389105_NPO) |
JACATO010000364.1: 528075-528134 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | AAGCUUGAGAAUGAUGACGUAUCGACAUUUAGGUCGUGACGGUUUGCAAUUUUGGUGAACAUCACGCAAAUUGCACUCGUCCCGGCCUGCAUGAGUACGAUUGGCAUCAGUGCCCUCUGUGet precursor sequence |
Structure | 10 20 30 40 50 AAGCUUGAGAAUGAUGA----| CGA U U UU UGGUGAA CGUAU CAU UAGGUCG GACGG UGCAAUUU \ GCAUG GUA GUCCGGC CUGCU ACGUUAAA C UGUCUCCCGUGACUACGGUUA^ A-- C C C- CGCACUA . 110 100 90 80 70 |
Deep sequencing | |
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU | Unknown |
Motifs | No |
Star sequence | Npo-Mir-92-o50_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGUCGUGACGGUUUGCAAUUUU -23
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|
Mature sequence | Npo-Mir-92-o50_3p (predicted) |
mirBase accession | None |
Sequence |
38- AAUUGCACUCGUCCCGGCCUGC -60
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|