MirGeneDB 2.1

MirGeneDB ID

Npo-Mir-92-o48

Family name MIR-92 (all species)
Seed AUUGCAC
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues Npo-Mir-92-o49  Npo-Mir-92-o50 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) N. pompilius
Node of Origin (family) Bilateria
Genome context
(GCA_018389105_NPO)
JACATO010000364.1: 507045-507103 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGCAUAUAAUUUUCUCUGCUUAACAGAUGGGCUGGUAUGGGAUCAAUGCUGUUUUAUUGUACUAGUAUUGCACUCGUCCCGGCCUUUGUGUUUUGUCAGGUUACUGCAAACUGUCCC
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Structure
        10         20         30        40        50         
UUUGCAUAUAAUUUUCU-   -|UU    GAU       U     AU        UUUUA 
                  CUG C  AACA   GGGCUGG AUGGG  CAAUGCUG     \
                  GAC G  UUGU   UCCGGCC UGCUC  GUUAUGAU     U
CCCUGUCAAACGUCAUUG   U^UU    GUU       C     AC        CAUGU 
       110       100        90        80        70        60
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Npo-Mir-92-o48_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGCUGGUAUGGGAUCAAUGCUG -23
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Mature sequence

Npo-Mir-92-o48_3p (predicted)

mirBase accessionNone
Sequence
37- UAUUGCACUCGUCCCGGCCUUU -59
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