Mir-1544-P2l

MirGeneDB ID

Mdo-Mir-1544-P2l

Family name

MIR-1544 (all species)

Seed

GUGUCCU

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-1545f

Paralogues

Mdo-Mir-1544-P1a Mdo-Mir-1544-P1b Mdo-Mir-1544-P1c Mdo-Mir-1544-P1d1 Mdo-Mir-1544-P1d2 Mdo-Mir-1544-P1d3 Mdo-Mir-1544-P1d4 Mdo-Mir-1544-P1d5 Mdo-Mir-1544-P1d6 Mdo-Mir-1544-P1e Mdo-Mir-1544-P1f Mdo-Mir-1544-P1g Mdo-Mir-1544-P1h1 Mdo-Mir-1544-P1h2 Mdo-Mir-1544-P1j Mdo-Mir-1544-P1k Mdo-Mir-1544-P1l Mdo-Mir-1544-P2a Mdo-Mir-1544-P2b Mdo-Mir-1544-P2c Mdo-Mir-1544-P2d Mdo-Mir-1544-P2e Mdo-Mir-1544-P2f Mdo-Mir-1544-P2g1 Mdo-Mir-1544-P2g2 Mdo-Mir-1544-P2h Mdo-Mir-1544-P2i Mdo-Mir-1544-P2j Mdo-Mir-1544-P2k Mdo-Mir-1544-P2m1 Mdo-Mir-1544-P2m2 Mdo-Mir-1544-P2n Mdo-Mir-1544-P2o

Orthologues

Node of Origin (locus)

M. domestica

Node of Origin (family)

M. domestica

Genome context
(monDom5_add)

X: 13941605-13941663 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1544-P2l)

Mir-1544-P1k X: 13921267-13921326 [-] UCSC Ensembl
Mir-1544-P1j X: 13923740-13923798 [-] UCSC Ensembl
Mir-1544-P2o X: 13926551-13926608 [-] UCSC Ensembl
Mir-1544-P2n X: 13927965-13928023 [-] UCSC Ensembl
Mir-1544-P2m2 X: 13930496-13930554 [-] UCSC Ensembl
Mir-1544-P1d1 X: 13933824-13933883 [-] UCSC Ensembl
Mir-1544-P2m1 X: 13935990-13936048 [-] UCSC Ensembl
Mir-1544-P1h1 X: 13939064-13939123 [-] UCSC Ensembl
Mir-1544-P2l X: 13941605-13941663 [-] UCSC Ensembl
Mir-1544-P2j X: 13948207-13948263 [-] UCSC Ensembl
Mir-1544-P1d2 X: 13950807-13950866 [-] UCSC Ensembl
Mir-1544-P2i X: 13953362-13953419 [-] UCSC Ensembl
Mir-1544-P2h X: 13958258-13958316 [-] UCSC Ensembl
Mir-1544-P1d6 X: 13960784-13960843 [-] UCSC Ensembl
Mir-1544-P2g2 X: 13966015-13966073 [-] UCSC Ensembl
Mir-1544-P1d5 X: 13968431-13968490 [-] UCSC Ensembl
Mir-1544-P2g1 X: 13970934-13970992 [-] UCSC Ensembl
Mir-1544-P1h2 X: 13973354-13973413 [-] UCSC Ensembl
Mir-1544-P2f X: 13975865-13975923 [-] UCSC Ensembl
Mir-1544-P1d4 X: 13978269-13978328 [-] UCSC Ensembl
Mir-1544-P1g X: 13983180-13983239 [-] UCSC Ensembl
Mir-1544-P2d X: 13985682-13985740 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAACAGAGCUACUACUUAGCACCCGACCCUGUGUCCUGGGAUAGAUAAGUGAUCCCUUUGUAAUCCCCUUUUCCAUCCCUGGCAUUGGUGCCGCUGCUACCUUCACCACCACUGCCCU

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Structure

        10          20          30        40        50         
GCAACAGAGCUACUACU--     CC  --|  CU     CU     A  U   UGAUCCCU 
                   UAGCA  CG  ACC  GUGUC  GGGAU GA AAG        U
                   AUCGU  GC  UGG  UACGG  CCCUA CU UUC        U
UCCCGUCACCACCACUUCC     C-  CG^  U-     U-     C  U   CCCUAAUG 
       110       100         90          80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-1544-P2l_5p

mirBase accession

MIMAT0050392

Sequence

0- UGUGUCCUGGGAUAGAUAAGUGA -23

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Star sequence

Mdo-Mir-1544-P2l_3p* (predicted)

mirBase accession

MIMAT0050393

Sequence

37- CCUUUUCCAUCCCUGGCAUUGG -59

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