MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-1544-P1b

Family name MIR-1544 (all species)
Seed GCACCCA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-1544a
Paralogues Mdo-Mir-1544-P1a  Mdo-Mir-1544-P1c  Mdo-Mir-1544-P1d1  Mdo-Mir-1544-P1d2  Mdo-Mir-1544-P1d3  Mdo-Mir-1544-P1d4  Mdo-Mir-1544-P1d5  Mdo-Mir-1544-P1d6  Mdo-Mir-1544-P1e  Mdo-Mir-1544-P1f  Mdo-Mir-1544-P1g  Mdo-Mir-1544-P1h1  Mdo-Mir-1544-P1h2  Mdo-Mir-1544-P1j  Mdo-Mir-1544-P1k  Mdo-Mir-1544-P1l  Mdo-Mir-1544-P2a  Mdo-Mir-1544-P2b  Mdo-Mir-1544-P2c  Mdo-Mir-1544-P2d  Mdo-Mir-1544-P2e  Mdo-Mir-1544-P2f  Mdo-Mir-1544-P2g1  Mdo-Mir-1544-P2g2  Mdo-Mir-1544-P2h  Mdo-Mir-1544-P2i  Mdo-Mir-1544-P2j  Mdo-Mir-1544-P2k  Mdo-Mir-1544-P2l  Mdo-Mir-1544-P2m1  Mdo-Mir-1544-P2m2  Mdo-Mir-1544-P2n  Mdo-Mir-1544-P2o 
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) M. domestica
Genome context
(monDom5_add)
X: 14005438-14005497 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1544-P1b)
Mir-1544-P2h X: 13958258-13958316 [-] UCSC Ensembl
Mir-1544-P1d6 X: 13960784-13960843 [-] UCSC Ensembl
Mir-1544-P2g2 X: 13966015-13966073 [-] UCSC Ensembl
Mir-1544-P1d5 X: 13968431-13968490 [-] UCSC Ensembl
Mir-1544-P2g1 X: 13970934-13970992 [-] UCSC Ensembl
Mir-1544-P1h2 X: 13973354-13973413 [-] UCSC Ensembl
Mir-1544-P2f X: 13975865-13975923 [-] UCSC Ensembl
Mir-1544-P1d4 X: 13978269-13978328 [-] UCSC Ensembl
Mir-1544-P1g X: 13983180-13983239 [-] UCSC Ensembl
Mir-1544-P2d X: 13985682-13985740 [-] UCSC Ensembl
Mir-1544-P1e X: 13994231-13994290 [-] UCSC Ensembl
Mir-1544-P2c X: 13996261-13996318 [-] UCSC Ensembl
Mir-1544-P1d3 X: 13998843-13998902 [-] UCSC Ensembl
Mir-1544-P2b X: 14003853-14003910 [-] UCSC Ensembl
Mir-1544-P1b X: 14005438-14005497 [-] UCSC Ensembl
Mir-1544-P2a X: 14007943-14008000 [-] UCSC Ensembl
Mir-1544-P1a X: 14010515-14010574 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAACAGAGCUAACCAUGAGCAGCUGCCCCUGCACCCAGGGAUAGGAUAGCGGUUCACUUGGAAGCCCCCUUUUCUAUCCCUGGUACUGGCGCCGCUGCUACCACCACCACUGCUACCUC
Get precursor sequence
Structure
        10          20        30        40        50          
GCAACAGAGCUAACCAUG--|     U  C  UGCAC            U  C  UUCACU 
                    AGCAGC GC CC     CCAGGGAUAGGA AG GG      \
                    UCGUCG CG GG     GGUCCCUAUCUU UC CC      U
CUCCAUCGUCACCACCACCA^     C  C  UCAU-            U  C  CGAAGG 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-1544-P1b_5p

mirBase accessionMIMAT0006144
Sequence
0- UGCACCCAGGGAUAGGAUAGCGG -23
Get sequence
Proposed targets TargetScanVert: mdo-miR-1544a-5p
Star sequence

Mdo-Mir-1544-P1b_3p*

mirBase accessionMIMAT0026768
Sequence
38- CCUUUUCUAUCCCUGGUACUGG -60
Get sequence
Proposed targets TargetScanVert: mdo-miR-1544a-3p