MirGeneDB 2.1
MirGeneDB ID

Mdo-Mir-1544-P1l

Family name MIR-1544 (all species)
Seed CUUUUCU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID
Paralogues Mdo-Mir-1544-P1a  Mdo-Mir-1544-P1b  Mdo-Mir-1544-P1c  Mdo-Mir-1544-P1d1  Mdo-Mir-1544-P1d2  Mdo-Mir-1544-P1d3  Mdo-Mir-1544-P1d4  Mdo-Mir-1544-P1d5  Mdo-Mir-1544-P1d6  Mdo-Mir-1544-P1e  Mdo-Mir-1544-P1f  Mdo-Mir-1544-P1g  Mdo-Mir-1544-P1h1  Mdo-Mir-1544-P1h2  Mdo-Mir-1544-P1j  Mdo-Mir-1544-P1k  Mdo-Mir-1544-P2a  Mdo-Mir-1544-P2b  Mdo-Mir-1544-P2c  Mdo-Mir-1544-P2d  Mdo-Mir-1544-P2e  Mdo-Mir-1544-P2f  Mdo-Mir-1544-P2g1  Mdo-Mir-1544-P2g2  Mdo-Mir-1544-P2h  Mdo-Mir-1544-P2i  Mdo-Mir-1544-P2j  Mdo-Mir-1544-P2k  Mdo-Mir-1544-P2l  Mdo-Mir-1544-P2m1  Mdo-Mir-1544-P2m2  Mdo-Mir-1544-P2n  Mdo-Mir-1544-P2o 
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) M. domestica
Genome context
(monDom5_add)		 X: 13909937-13909995 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1544-P1l)		 Mir-1544-P1k X: 13921267-13921326 [-] UCSC Ensembl
Mir-1544-P1j X: 13923740-13923798 [-] UCSC Ensembl
Mir-1544-P2o X: 13926551-13926608 [-] UCSC Ensembl
Mir-1544-P2n X: 13927965-13928023 [-] UCSC Ensembl
Mir-1544-P2m2 X: 13930496-13930554 [-] UCSC Ensembl
Mir-1544-P1d1 X: 13933824-13933883 [-] UCSC Ensembl
Mir-1544-P2m1 X: 13935990-13936048 [-] UCSC Ensembl
Mir-1544-P1h1 X: 13939064-13939123 [-] UCSC Ensembl
Mir-1544-P2l X: 13941605-13941663 [-] UCSC Ensembl
Mir-1544-P2j X: 13948207-13948263 [-] UCSC Ensembl
Mir-1544-P1d2 X: 13950807-13950866 [-] UCSC Ensembl
Mir-1544-P2i X: 13953362-13953419 [-] UCSC Ensembl
Mir-1544-P2h X: 13958258-13958316 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGACAGAUCUAACCAUUAGCACCUGACACUACACCCAGGGACAGAAUAGCAGUUCACUUGGAAGCCCCCUUUUCUAUCCCUGGGACUGGUGCUGCGCACCACCACUGCUGCUCUCACUG
Get precursor sequence
Structure
        10                 20        30        40        50         
UGACAGAUCUAACCAUU---------|     UGACACUACA        C    U  CAGUUCACU 
                          AGCACC          CCCAGGGA AGAA AG         \
                          UCGUGG          GGGUCCCU UCUU UC         U
GUCACUCUCGUCGUCACCACCACGCG^     UCA-------        A    U  CCCCGAAGG 
       110       100        90               80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Star sequence

Mdo-Mir-1544-P1l_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACACCCAGGGACAGAAUAGCAG -22
Get sequence
Mature sequence

Mdo-Mir-1544-P1l_3p
mirBase accessionNone
Sequence 
37- CCUUUUCUAUCCCUGGGACUGG -59
Get sequence