MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-1544-P1f

Family name MIR-1544 (all species)
Seed GCACUCA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID
Paralogues Mdo-Mir-1544-P1a  Mdo-Mir-1544-P1b  Mdo-Mir-1544-P1c  Mdo-Mir-1544-P1d1  Mdo-Mir-1544-P1d2  Mdo-Mir-1544-P1d3  Mdo-Mir-1544-P1d4  Mdo-Mir-1544-P1d5  Mdo-Mir-1544-P1d6  Mdo-Mir-1544-P1e  Mdo-Mir-1544-P1g  Mdo-Mir-1544-P1h1  Mdo-Mir-1544-P1h2  Mdo-Mir-1544-P1j  Mdo-Mir-1544-P1k  Mdo-Mir-1544-P1l  Mdo-Mir-1544-P2a  Mdo-Mir-1544-P2b  Mdo-Mir-1544-P2c  Mdo-Mir-1544-P2d  Mdo-Mir-1544-P2e  Mdo-Mir-1544-P2f  Mdo-Mir-1544-P2g1  Mdo-Mir-1544-P2g2  Mdo-Mir-1544-P2h  Mdo-Mir-1544-P2i  Mdo-Mir-1544-P2j  Mdo-Mir-1544-P2k  Mdo-Mir-1544-P2l  Mdo-Mir-1544-P2m1  Mdo-Mir-1544-P2m2  Mdo-Mir-1544-P2n  Mdo-Mir-1544-P2o 
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) M. domestica
Genome context
(monDom5_add)
X: 13990724-13990783 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1544-P1f)
Mir-1544-P2l X: 13941605-13941663 [-] UCSC Ensembl
Mir-1544-P2j X: 13948207-13948263 [-] UCSC Ensembl
Mir-1544-P1d2 X: 13950807-13950866 [-] UCSC Ensembl
Mir-1544-P2i X: 13953362-13953419 [-] UCSC Ensembl
Mir-1544-P2h X: 13958258-13958316 [-] UCSC Ensembl
Mir-1544-P1d6 X: 13960784-13960843 [-] UCSC Ensembl
Mir-1544-P2g2 X: 13966015-13966073 [-] UCSC Ensembl
Mir-1544-P1d5 X: 13968431-13968490 [-] UCSC Ensembl
Mir-1544-P2g1 X: 13970934-13970992 [-] UCSC Ensembl
Mir-1544-P1h2 X: 13973354-13973413 [-] UCSC Ensembl
Mir-1544-P2f X: 13975865-13975923 [-] UCSC Ensembl
Mir-1544-P1d4 X: 13978269-13978328 [-] UCSC Ensembl
Mir-1544-P1g X: 13983180-13983239 [-] UCSC Ensembl
Mir-1544-P2d X: 13985682-13985740 [-] UCSC Ensembl
Mir-1544-P1e X: 13994231-13994290 [-] UCSC Ensembl
Mir-1544-P2c X: 13996261-13996318 [-] UCSC Ensembl
Mir-1544-P1d3 X: 13998843-13998902 [-] UCSC Ensembl
Mir-1544-P2b X: 14003853-14003910 [-] UCSC Ensembl
Mir-1544-P1b X: 14005438-14005497 [-] UCSC Ensembl
Mir-1544-P2a X: 14007943-14008000 [-] UCSC Ensembl
Mir-1544-P1a X: 14010515-14010574 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGACAGAACUAACCAUUAGCACCUGACCCUGCACUCAGGGAUAGAAUAGCGGUCCACUUAGCAGCCCACUUUUCUAUCCCUGGGACUGGUGCCGUUGCUCCUGCUACCACCACUGCCAA
Get precursor sequence
Structure
        10                20        30        40        50          
GCGACAGAACUAACCAUUA--------|    UGACCCUGCA             U  C  UCCACU 
                           GCACC          CUCAGGGAUAGAA AG GG      \
                           CGUGG          GGGUCCCUAUCUU UC CC      U
AACCGUCACCACCAUCGUCCUCGUUGC^    UCA-------             U  A  CGACGA 
.       110       100        90               80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-1544-P1f_5p

mirBase accessionNone
Sequence
0- UGCACUCAGGGAUAGAAUAGCGG -23
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Star sequence

Mdo-Mir-1544-P1f_3p*

mirBase accessionNone
Sequence
38- ACUUUUCUAUCCCUGGGACUGG -60
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