MirGeneDB ID | Laf-Mir-672 |
Family name |
MIR-672 (all species) |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cja-Mir-672
Cpo-Mir-672
Dno-Mir-672
Ete-Mir-672
Mmr-Mir-672
Mmu-Mir-672
Ocu-Mir-672
Rno-Mir-672
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010051.1: 26676549-26676608 [+]
UCSC
Ensembl
|
Seed |
GAGGUUG |
Precursor (pre-Mir +30nt flank) |
UUACAAGAUGGUGAUCUAGCCCUUUAGUUUUGAGGUUGGUGUACUGUGUGUGAGUAUAUAUAUUUUUCACACACAGUCACUAUCUUCGAAAGUGAGGGUGCACAUCUUUCUGAGCCAUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUACAAGAUGGUGAUCUA- -| G U U GUAUAU
GC CCUUUA UUUUGAGG UGGUG ACUGUGUGUGA \
CG GGGAGU AAAGCUUC AUCAC UGACACACACU A
UCUACCGAGUCUUUCUACA U^ G U - UUUUAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Laf-Mir-672_5p |
mirBase accession | None |
Sequence |
0- UGAGGUUGGUGUACUGUGUGUGA -23
Get sequence
|
Star sequence |
Laf-Mir-672_3p* (predicted) |
mirBase accession | None |
Sequence |
38- ACACACAGUCACUAUCUUCGAA -60
Get sequence
|