| MirGeneDB ID | Cpo-Mir-672 |
|---|
| Family name |
MIR-672 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-672
|
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| Paralogues |
|
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| Orthologues |
Cja-Mir-672
Dno-Mir-672
Ete-Mir-672
Laf-Mir-672
Mmr-Mir-672
Mmu-Mir-672
Ocu-Mir-672
Rno-Mir-672
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(cavPor3) |
scaffold_26: 21954918-21954978 [+]
UCSC
|
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| Seed |
GAGGUUG |
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Precursor
(pre-Mir +30nt flank) |
UUAAAAGAUGGUUAUACAGAACUUUAGUUUUGAGGUUGGUGUACUGUGUGUGGGUAUACAUAUUUAUCCCACACAGCCACUAUGUUUCAAAGCAAAGGUGCACAUCUUUGUCUGCCAUCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUAAAAGAUGGUUAUACAGA-- A GG -| UA U GUAUAC
ACUUU GUUUUGA U UGGUG CUGUGUG GG A
UGGAA CGAAACU G AUCAC GACACAC CC U
CUCUACCGUCUGUUUCUACACG A UU U^ C- - UAUUUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Mature sequence |
Cpo-Mir-672_5p (predicted) |
| mirBase accession | MIMAT0047371 |
|---|
| Sequence |
0- UGAGGUUGGUGUACUGUGUGUGG -23
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-672_3p* (predicted) |
| mirBase accession | MIMAT0047372 |
|---|
| Sequence |
38- CCACACAGCCACUAUGUUUCAAA -61
Get sequence
|
|---|
