MirGeneDB 3.0

MirGeneDB ID

Hsa-Mir-296

Family name MIR-296 (all species)
Species Human (Homo sapiens)
MiRBase ID hsa-mir-296
Paralogues
Orthologues Bta-Mir-296  Cfa-Mir-296  Cja-Mir-296  Cpo-Mir-296  Dno-Mir-296  Eca-Mir-296  Laf-Mir-296  Mml-Mir-296  Mmr-Mir-296  Mmu-Mir-296  Pab-Mir-296  Rno-Mir-296 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(hg38)
chr20: 58817626-58817681 [-] UCSC Ensembl
Seed GGGCCCC
Precursor
(pre-Mir +30nt flank)
GUGGGAGGUGAGGAGAAAGGACCCUUCCAGAGGGCCCCCCCUCAAUCCUGUUGUGCCUAAUUCAGAGGGUUGGGUGGAGGCUCUCCUGAAGGGCUCUGAAGAGCGCUGCACCCGCA
Get precursor sequence
Structure
        10          20        30        40        50       
GUGGGAGGUGAGGAGAA--| GA      CA       C  C         GUUGUGC 
                   AG  CCCUUC  GAGGGCC CC CUCAAUCCU       C
                   UC  GGGAAG  CUCUCGG GG GGGUUGGGA       U
ACGCCCACGUCGCGAGAAG^ UC      UC       A  U         GACUUAA 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Mature sequence

Hsa-Mir-296_5p

mirBase accessionMIMAT0000690
Sequence
0- AGGGCCCCCCCUCAAUCCUGU -21
Get sequence
Proposed targets microrna.org: MIMAT0000690
TargetScanVert: hsa-miR-296-5p
TargetMiner: hsa-miR-296-5p
miRDB: MIMAT0000690
Star sequence

Hsa-Mir-296_3p*

mirBase accessionMIMAT0004679
Sequence
35- AGGGUUGGGUGGAGGCUCUCC -56
Get sequence
Proposed targets microrna.org: MIMAT0004679
TargetScanVert: hsa-miR-296-3p
TargetMiner: hsa-miR-296-3p
miRDB: MIMAT0004679