Mir-154-P16b

MirGeneDB ID

Hsa-Mir-154-P16b

Family name

MIR-154 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-1185-2

Paralogues

Hsa-Mir-154-P1 Hsa-Mir-154-P2-v1 Hsa-Mir-154-P3-v1 Hsa-Mir-154-P4 Hsa-Mir-154-P5 Hsa-Mir-154-P6a-v1 Hsa-Mir-154-P6b Hsa-Mir-154-P7 Hsa-Mir-154-P8a Hsa-Mir-154-P8b Hsa-Mir-154-P9 Hsa-Mir-154-P10 Hsa-Mir-154-P11 Hsa-Mir-154-P12 Hsa-Mir-154-P14 Hsa-Mir-154-P16a Hsa-Mir-154-P17 Hsa-Mir-154-P18 Hsa-Mir-154-P19 Hsa-Mir-154-P20 Hsa-Mir-154-P21 Hsa-Mir-154-P23 Hsa-Mir-154-P24 Hsa-Mir-154-P25 Hsa-Mir-154-P26 Hsa-Mir-154-P28-v1 Hsa-Mir-154-P29 Hsa-Mir-154-P30 Hsa-Mir-154-P31 Hsa-Mir-154-P32 Hsa-Mir-154-P33 Hsa-Mir-154-P34

Orthologues

Bta-Mir-154-P16 Cfa-Mir-154-P16 Cja-Mir-154-P16b Cpo-Mir-154-P16 Eca-Mir-154-P16 Ete-Mir-154-P16 Laf-Mir-154-P16 Mml-Mir-154-P16b Mmr-Mir-154-P16 Pab-Mir-154-P16b

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(hg38)

chr14: 101044212-101044271 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P16b)

Mir-154-P1 chr14: 101022071-101022129 [+] UCSC Ensembl
Mir-154-P2-v2 chr14: 101023339-101023396 [+] UCSC Ensembl
Mir-154-P2-v1 chr14: 101023340-101023395 [+] UCSC Ensembl
Mir-154-P3-v1 chr14: 101023799-101023853 [+] UCSC Ensembl
Mir-154-P3-v2 chr14: 101023800-101023852 [+] UCSC Ensembl
Mir-154-P4 chr14: 101025020-101025076 [+] UCSC Ensembl
Mir-154-P5 chr14: 101025585-101025640 [+] UCSC Ensembl
Mir-154-P6a-v1 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P6a-v2 chr14: 101025747-101025802 [+] UCSC Ensembl
Mir-154-P7 chr14: 101026035-101026092 [+] UCSC Ensembl
Mir-154-P8a chr14: 101026796-101026855 [+] UCSC Ensembl
Mir-154-P8b chr14: 101027113-101027172 [+] UCSC Ensembl
Mir-154-P9 chr14: 101029648-101029703 [+] UCSC Ensembl
Mir-154-P10 chr14: 101030064-101030120 [+] UCSC Ensembl
Mir-154-P11 chr14: 101031997-101032054 [+] UCSC Ensembl
Mir-154-P12 chr14: 101033768-101033825 [+] UCSC Ensembl
Mir-376-P1 chr14: 101039358-101039415 [+] UCSC Ensembl
Mir-376-P2 chr14: 101039695-101039752 [+] UCSC Ensembl
Mir-376-P3 chr14: 101040081-101040138 [+] UCSC Ensembl
Mir-154-P14 chr14: 101040234-101040289 [+] UCSC Ensembl
Mir-376-P4 chr14: 101040460-101040517 [+] UCSC Ensembl
Mir-376-P5 chr14: 101040788-101040845 [+] UCSC Ensembl
Mir-154-P16a chr14: 101042991-101043050 [+] UCSC Ensembl
Mir-154-P16b chr14: 101044212-101044271 [+] UCSC Ensembl
Mir-154-P17 chr14: 101045927-101045989 [+] UCSC Ensembl
Mir-154-P18 chr14: 101046469-101046526 [+] UCSC Ensembl
Mir-154-P19 chr14: 101047329-101047392 [+] UCSC Ensembl
Mir-154-P20 chr14: 101047911-101047969 [+] UCSC Ensembl
Mir-544 chr14: 101048676-101048732 [+] UCSC Ensembl
Mir-154-P21 chr14: 101049572-101049631 [+] UCSC Ensembl
Mir-154-P23 chr14: 101052458-101052515 [+] UCSC Ensembl
Mir-154-P24 chr14: 101054316-101054373 [+] UCSC Ensembl
Mir-134 chr14: 101054694-101054754 [+] UCSC Ensembl
Mir-154-P25 chr14: 101055427-101055485 [+] UCSC Ensembl
Mir-154-P6b chr14: 101056233-101056289 [+] UCSC Ensembl
Mir-154-P26 chr14: 101059769-101059826 [+] UCSC Ensembl
Mir-154-P28-v2 chr14: 101060595-101060650 [+] UCSC Ensembl
Mir-154-P28-v1 chr14: 101060596-101060649 [+] UCSC Ensembl
Mir-154-P29 chr14: 101062056-101062115 [+] UCSC Ensembl
Mir-541 chr14: 101064504-101064569 [+] UCSC Ensembl
Mir-154-P30 chr14: 101065314-101065367 [+] UCSC Ensembl
Mir-154-P31 chr14: 101065465-101065519 [+] UCSC Ensembl
Mir-154-P32 chr14: 101065606-101065661 [+] UCSC Ensembl
Mir-154-P33 chr14: 101065925-101065981 [+] UCSC Ensembl
Mir-154-P34 chr14: 101066731-101066786 [+] UCSC Ensembl

Seed

GAGGAUA

Precursor
(pre-Mir +30nt flank)

GCUCUUUGAGCCACCCUUUGGUACUUAAAGAGAGGAUACCCUUUGUAUGUUCACUUGAUUAAUGGCGAAUAUACAGGGGGAGACUCUCAUUUGCGUAUCAAACUGUCGGAGAAGACACUC

Get precursor sequence

Structure

        10          20         30        40        50         
GCUCUUUGAGCCACCCU--       U    -|    GAUA              ACUUGA 
                   UUGGUAC UAAA GAGAG    CCCUUUGUAUGUUC      U
                   AACUAUG GUUU CUCUC    GGGGGACAUAUAAG      U
CUCACAGAAGAGGCUGUCA       C    A^    AGA-              CGGUAA 
.       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-154-P16b_5p

mirBase accession

MIMAT0005798

Sequence

0- AGAGGAUACCCUUUGUAUGUUC -22

Get sequence

Proposed targets

microrna.org: MIMAT0005798
TargetScanVert: hsa-miR-1185-5p
TargetMiner: hsa-miR-1185-5p
miRDB: MIMAT0005798

Co-mature sequence

Hsa-Mir-154-P16b_3p

mirBase accession

MIMAT0022713

Sequence

38- AUAUACAGGGGGAGACUCUCAU -60

Get sequence

Proposed targets

TargetScanVert: hsa-miR-1185-2-3p
TargetMiner: hsa-miR-1185-2-3p
miRDB: MIMAT0022713