Mir-92-o93

MirGeneDB ID

Hru-Mir-92-o93

Family name

MIR-92 (all species)

Species

Red Abalone (Haliotis rufescens)

MiRBase ID

Paralogues

Hru-Mir-92-o92 Hru-Mir-92-o94 Hru-Mir-92-o95

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

H. rufescens

Node of Origin (family)

Bilateria

Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)

JALGQA010000014.1: 5912798-5912858 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o93)

Mir-92-o92 JALGQA010000014.1: 5911876-5911932 [+] UCSC Ensembl
Mir-92-o93 JALGQA010000014.1: 5912798-5912858 [+] UCSC Ensembl
Mir-92-o94 JALGQA010000014.1: 5917110-5917167 [+] UCSC Ensembl
Mir-92-o95 JALGQA010000014.1: 5919490-5919546 [+] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GAUCCUGCUGGCUGGCAGAGGGACACGGGCAGGUCGUGAUUUGCGCAAUCCUUGGUUGAUACAGAUUCCAAUUGCACUUGUCCCGGCCUGCUUGUGACACCCCACCACAUCCCCAGCACAC

Get precursor sequence

Structure

        10        20           30        40        50        60 
GAUCCUGCUGGCUGGCAGA   A---|            U   UUGC     CCU   UUGAU 
                   GGG    CACGGGCAGGUCG GAU    GCAAU   UGG     A
                   CCC    GUGUUCGUCCGGC CUG    CGUUA   ACC     C
CACACGACCCCUACACCA-   CACA^            C   UUCA     ---   UUAGA 
 .       110        100        90        80           70

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Star sequence

Hru-Mir-92-o93_5p*

mirBase accession

None

Sequence

0- AGGUCGUGAUUUGCGCAAUCCUUGG -25

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Mature sequence

Hru-Mir-92-o93_3p

mirBase accession

None

Sequence

39- AAUUGCACUUGUCCCGGCCUGC -61

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