MirGeneDB ID | Gmo-Mir-737 |
Family name |
MIR-737 (all species) |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-737
|
Paralogues |
|
Orthologues |
Aca-Mir-737
Ami-Mir-737
Cli-Mir-737
Cpi-Mir-737
Dre-Mir-737
Gja-Mir-737
Lch-Mir-737
Loc-Mir-737
Mal-Mir-737
Mun-Mir-737
Oan-Mir-737
Pbv-Mir-737
Spt-Mir-737
Tni-Mir-737
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2066: 50115-50173 [+]
UCSC
Ensembl
|
Seed |
UUUUUUU |
Precursor (pre-Mir +30nt flank) |
CAGGAAGCCAUGACACUCUGUGGUGCUGUAGUUUUUUUAGGUUUUGAUUUUUGUAUGCUGGAUGAGAAAAUCAAGACCUAAAGAAAAUCCAGCGCUGCAGCUCUGUACUCUCUGCUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGAAGCCAUGACACU--| UG UAG GUAUGC
CUG GUGCUG UUUUUUUAGGUUUUGAUUUUU \
GAC CGCGAC AAAGAAAUCCAGAACUAAAAG U
CUCUCGUCUCUCAUGUCUC^ GU CUA AGUAGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-737_5p |
mirBase accession | MIMAT0044172 |
Sequence |
0- GUUUUUUUAGGUUUUGAUUUUU -22
Get sequence
|
Star sequence |
Gmo-Mir-737_3p* |
mirBase accession | MIMAT0044173 |
Sequence |
37- AAAUCAAGACCUAAAGAAAAUC -59
Get sequence
|