MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-23-P1

Family name MIR-23 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-23a-2
Paralogues Gmo-Mir-23-P2b  Gmo-Mir-23-P3  Gmo-Mir-23-P4a 
Orthologues Dre-Mir-23-P1  Lch-Mir-23-P1  Loc-Mir-23-P1  Mal-Mir-23-P1  Pma-Mir-23-o1  Sto-Mir-23-P1  Tni-Mir-23-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig135158: 805-865 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P1)		 Mir-27-P1 contig135158: 456-519 [-] UCSC Ensembl
Mir-23-P1 contig135158: 805-865 [-] UCSC Ensembl
Seed UCACAUU
Precursor
(pre-Mir +30nt flank)		 
CGGGCUGCUGAUUGCUUGCUCCAGCUGGAGGGAUUCCUGGCAGAGUGAUUUUGUUGUGAUGUCAUGUAAAUCACAUUGCCAGGGAUUUCCAACCAGCUGCAGCCCCACUGCAGCACCCAGA
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Structure
        10         20          30        40        50         
CGGGCUGCUGAUUGCUU-   C       A--|GG           A       UGUUGUG 
                  GCU CAGCUGG   G  AUUCCUGGCAG GUGAUUU       A
                  CGA GUCGACC   C  UAGGGACCGUU CACUAAA       U
AGACCCACGACGUCACCC   C       AAC^UU           A       UGUACUG 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-23-P1_5p*
mirBase accessionMIMAT0044004
Sequence 
0- GGAUUCCUGGCAGAGUGAUUU -21
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Mature sequence

Gmo-Mir-23-P1_3p
mirBase accessionMIMAT0044005
Sequence 
39- AUCACAUUGCCAGGGAUUUCCA -61
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