MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-455

Family name MIR-455 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-455
Paralogues Gga-Mir-455-v1 
Orthologues Gja-Mir-455  Lch-Mir-455  Mun-Mir-455  Pbv-Mir-455  Pma-Mir-455  Spt-Mir-455  Xtr-Mir-455 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 17: 5073862-5073921 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-455-v2)		 Mir-455-v2 17: 5073862-5073921 [+] UCSC Ensembl
Mir-455-v3 17: 5073862-5073921 [+] UCSC Ensembl
Mir-455-v1 17: 5073863-5073920 [+] UCSC Ensembl
Variant

Gga-Mir-455-v2
Seed CAGUCCA
Precursor
(pre-Mir +30nt flank)		 
CCCGGAAUUCUCCUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCAUGGCUGC
Get precursor sequence
Structure
        10          20        30        40        50         
CCCGGAAUUCUCCUGAU--| C   U UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CGUCGGUACUACUUUAUUU^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-455-v2_5p*
mirBase accessionMIMAT0003364
Sequence 
0- GUAUGUGCCCUUGGACUACAU -21
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Proposed targets TargetScanVert: gga-miR-455-5p
miRDB: MIMAT0003364
Mature sequence

Gga-Mir-455-v2_3p
mirBase accessionMIMAT0006788
Sequence 
39- GCAGUCCAUGGGCAUAUACAC -60
Get sequence
Proposed targets TargetScanVert: gga-miR-455-3p
miRDB: MIMAT0006788
Variant

Gga-Mir-455-v1
Seed AUGUGCC
Precursor
(pre-Mir +30nt flank)		 
CCGGAAUUCUCCUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCAUGGCUG
Get precursor sequence
Structure
        10          20        30        40        50        
CCGGAAUUCUCCUGAUC-  -|  U UG  G          U      A   C UGGAA 
                  CC UGG G  AG GUAUGUGCCC UGGACU CAU G     G
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     C
GUCGGUACUACUUUAUUU  A^  C GU  A          U      C   C ACGAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-455-v1_5p
mirBase accessionMIMAT0003364
Sequence 
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
Proposed targets TargetScanVert: gga-miR-455-5p
miRDB: MIMAT0003364
Star sequence

Gga-Mir-455-v1_3p*
mirBase accessionMIMAT0006788
Sequence 
36- AUGCAGUCCAUGGGCAUAUACA -58
Get sequence
Proposed targets TargetScanVert: gga-miR-455-3p
miRDB: MIMAT0006788
Variant

Gga-Mir-455-v3
Seed GCAGUCC
Precursor
(pre-Mir +30nt flank)		 
CCCGGAAUUCUCCUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCAUGGCUGC
Get precursor sequence
Structure
        10          20        30        40        50         
CCCGGAAUUCUCCUGAU--| C   U UG  G          U      A   CGUGGAA 
                   CC UGG G  AG GUAUGUGCCC UGGACU CAU       G
                   GG ACU C  UC CAUAUACGGG ACCUGA GUA       C
CGUCGGUACUACUUUAUUU^ A   C GU  A          U      C   CCACGAC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-455-v3_5p*
mirBase accessionMIMAT0003364
Sequence 
0- GUAUGUGCCCUUGGACUACAUC -22
Get sequence
Proposed targets TargetScanVert: gga-miR-455-5p
miRDB: MIMAT0003364
Mature sequence

Gga-Mir-455-v3_3p
mirBase accessionMIMAT0006788
Sequence 
38- UGCAGUCCAUGGGCAUAUACAC -60
Get sequence
Proposed targets TargetScanVert: gga-miR-455-3p
miRDB: MIMAT0006788