MirGeneDB ID | Ete-Mir-574 |
Family name |
MIR-574 (all species) |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-574
Cfa-Mir-574
Cja-Mir-574
Cpo-Mir-574
Dno-Mir-574
Eca-Mir-574
Hsa-Mir-574
Laf-Mir-574
Mml-Mir-574
Mmr-Mir-574
Mmu-Mir-574
Ocu-Mir-574
Pab-Mir-574
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980307: 6776196-6776253 [-]
UCSC
|
Seed |
GAGUGUG |
Precursor (pre-Mir +30nt flank) |
GGCCGAGGGCCCUGCGUGGGUGCGGGCGUGUGAGUGUGUGUGUGUGAGUGUGUGUCGCUCCGGGUCCACGCUCAUGCACACACCCACACGCCCGCGCUCCGGGUCUGCCCCCUCGGCC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCCGAGGGCCCUGCGU- -| AGU UGUCGC
GG GUGCGGGCGUGUG GUGUGUGUGUGAGUGUG U
CC CGCGCCCGCACAC CACACACGUACUCGCAC C
CCGGCUCCCCCGUCUGGG U^ C-- CUGGGC
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-574_5p |
mirBase accession | None |
Sequence |
0- UGAGUGUGUGUGUGUGAGUGUGUG -24
Get sequence
|
Co-mature sequence |
Ete-Mir-574_3p |
mirBase accession | None |
Sequence |
36- CACGCUCAUGCACACACCCACA -58
Get sequence
|