MirGeneDB 2.1
MirGeneDB ID

Efe-Mir-279-o16

Family name MIR-279 (all species)
Seed GACUAGA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-279-o14  Efe-Mir-279-o15  Efe-Mir-279-o17  Efe-Mir-279-o18  Efe-Mir-279-o19  Efe-Mir-279-o20 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.229038: 770-830 [-]
Precursor
(pre-Mir +30nt flank)
GUGACGAUGACUUUUAGGAGCGGAGCAGUGGGUGGGUGUAUGUCUGGUCACGUGUUCUAUAUCGUAUCCGUGACUAGAUAUAUACUCAUCUACAGUUCCGUUCUAUUUAUUACAAAGAUCA
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Structure
        10         20        30        40        50        60
GUGACGAUGACUUUUAG-|        A                         UGUUCUA 
                  GAGCGGAGC GUGGGUGGGUGUAUGUCUGGUCACG       U
                  CUUGCCUUG CAUCUACUCAUAUAUAGAUCAGUGC       A
ACUAGAAACAUUAUUUAU^        A                         CUAUGCU 
 .       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Efe-Mir-279-o16_5p*
mirBase accessionNone
Sequence 
0- GGUGGGUGUAUGUCUGGUCACG -22
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Mature sequence

Efe-Mir-279-o16_3p
mirBase accessionNone
Sequence 
40- UGACUAGAUAUAUACUCAUCU -61
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