| MirGeneDB ID | Efe-Mir-279-o18 |
|---|
| Family name |
MIR-279 (all species) |
|---|
| Seed |
GACUAGA |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-279-o14
Efe-Mir-279-o15
Efe-Mir-279-o16
Efe-Mir-279-o17
Efe-Mir-279-o19
Efe-Mir-279-o20
|
|---|
| Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(Efe_combined) |
Efet.01.1630742: 220-281 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UACAUAAAUGCAAUGCGGCGGACUGGCGUGGAUGAGUGGGAUUCUGUUCCAUGUGUCAUUCCGCAAUUCAUGACUAGAUCCACACUCAUCCACAACCACCCGCAACACAUCCACGCUGUACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UACAUAAAUGCAAUGCG-- AC C- -| CU UC UGUCAUU
GCGG UGG GUGGAUGAGUG GGAUU GU CAUG \
CGCC ACC CACCUACUCAC CCUAG CA GUAC C
ACAUGUCGCACCUACACAA C- AA A^ AU -- UUAACGC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-279-o18_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAUGAGUGGGAUUCUGUUCCAUG -23
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-279-o18_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UGACUAGAUCCACACUCAUCCA -62
Get sequence
|
|---|
