| MirGeneDB ID | Efe-Mir-279-o20 |
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| Family name |
MIR-279 (all species) |
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| Seed |
GACUAGA |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-279-o14
Efe-Mir-279-o15
Efe-Mir-279-o16
Efe-Mir-279-o17
Efe-Mir-279-o18
Efe-Mir-279-o19
|
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| Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Efe_combined) |
Efet.01.1381559: 71-129 [-]
|
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Precursor
(pre-Mir +30nt flank) |
NNNNNNNNNNAGCGAGGCAGAUUAUCGGCGGACGGGUGUAUUUCUCGUCCAUGUUGGCGAUCUAUCAUGACUAGAUCUACACUCGUCCGUCGAGCUCUGGGACCAACGAGGUGUGCAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
NNNNNNNNNNAGCGAGG---| UUA UU C C UUGGC
CAGA UCGGCGGACGGGUGUA UCU GUC AUG G
GUCU AGCUGCCUGCUCACAU AGA CAG UAC A
UUACGUGUGGAGCAACCAGG^ CG- CU U - UAUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-279-o20_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GACGGGUGUAUUUCUCGUCCAUG -23
Get sequence
|
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| Mature sequence |
Efe-Mir-279-o20_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGACUAGAUCUACACUCGUCCG -59
Get sequence
|
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