MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-935

Family name MIR-935 (all species)
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-935-v1  Cfa-Mir-935-v1  Cja-Mir-935  Dno-Mir-935-v1  Hsa-Mir-935-v1  Mml-Mir-935-v1  Mmr-Mir-935  Mmu-Mir-935-v1  Ocu-Mir-935-v1  Pab-Mir-935  Rno-Mir-935-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009157.1: 23431175-23431234 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-935-v1)
Mir-935-v1 CM009157.1: 23431175-23431234 [+] UCSC Ensembl
Mir-935-v2 CM009157.1: 23431175-23431234 [+] UCSC Ensembl
Variant

Eca-Mir-935-v1

Seed AGUUACC
Precursor
(pre-Mir +30nt flank)
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
Get precursor sequence
Structure
        10           20        30        40        50         
CUGCUCAAGGCCGGCGG---|  C    G    A             CCC  C  CCAUCC 
                    GGG GCGG CGGC GUGGCGGGAGCGG   CU GG      U
                    CCC CGCC GCCG CAUCGCCUUCGCC   GA CC      C
CGACCUCGCCCUCGAUCUCG^  U    -    C             AUU  C  GUCUGC 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-935-v1_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUGGCGGGAGCGGCCCCUCGG -22
Get sequence
Mature sequence

Eca-Mir-935-v1_3p

mirBase accessionNone
Sequence
38- CAGUUACCGCUUCCGCUACCGC -60
Get sequence
Variant

Eca-Mir-935-v2

Seed CAGUUAC
Precursor
(pre-Mir +30nt flank)
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
Get precursor sequence
Structure
        10           20        30        40        50         
CUGCUCAAGGCCGGCGG---|  C    G    A             CCC  C   CAUCC 
                    GGG GCGG CGGC GUGGCGGGAGCGG   CU GGC     U
                    CCC CGCC GCCG CAUCGCCUUCGCC   GA CCG     C
CGACCUCGCCCUCGAUCUCG^  U    -    C             AUU  C   UCUGC 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-935-v2_5p*

mirBase accessionNone
Sequence
0- AGUGGCGGGAGCGGCCCCUCGGC -23
Get sequence
Mature sequence

Eca-Mir-935-v2_3p

mirBase accessionNone
Sequence
37- CCAGUUACCGCUUCCGCUACCGC -60
Get sequence