| MirGeneDB ID | Cja-Mir-935 |
|---|
| Family name |
MIR-935 (all species) |
|---|
| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-935-v1
Cfa-Mir-935-v1
Dno-Mir-935-v1
Eca-Mir-935-v1
Hsa-Mir-935-v1
Mml-Mir-935-v1
Mmr-Mir-935
Mmu-Mir-935-v1
Ocu-Mir-935-v1
Pab-Mir-935
Rno-Mir-935-v1
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 45801642-45801701 [+]
UCSC
Ensembl
|
|---|
| Seed |
AGUUACC |
|---|
Precursor
(pre-Mir +30nt flank) |
CUGCUCAAGGCCGGCGGGGGCGCGGGCGGCAGUGGCGGGAGCGGCCCCUCGGCCAUCCUCCGUCUGCCCAGUUACCGCUUCCGCUACCGCCGCCGCUCCCGCUCUAGCUCCCGCUCCAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGCUCAAGGCCGGCGG---| C G A CCC C CCAUCC
GGG GCGG CGGC GUGGCGGGAGCGG CU GG U
CCC CGCC GCCG CAUCGCCUUCGCC GA CC C
CGACCUCGCCCUCGAUCUCG^ U - C AUU C GUCUGC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Cja-Mir-935_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGGCGGGAGCGGCCCCUCGG -22
Get sequence
|
|---|
| Mature sequence |
Cja-Mir-935_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CAGUUACCGCUUCCGCUACCGC -60
Get sequence
|
|---|
