Mir-450-P3

MirGeneDB ID

Eca-Mir-450-P3

Family name

MIR-450 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-450b

Paralogues

Eca-Mir-450-P1 Eca-Mir-450-P2

Orthologues

Bta-Mir-450-P3 Cfa-Mir-450-P3 Cja-Mir-450-P3 Cpo-Mir-450-P3 Dno-Mir-450-P3 Hsa-Mir-450-P3 Laf-Mir-450-P3 Mml-Mir-450-P3 Mmr-Mir-450-P3 Mmu-Mir-450-P3 Ocu-Mir-450-P3 Pab-Mir-450-P3 Rno-Mir-450-P3a Rno-Mir-450-P3b

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 111015235-111015292 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-450-P3)

Mir-450-P3 CM009179.1: 111015235-111015292 [-] UCSC Ensembl
Mir-450-P2 CM009179.1: 111015405-111015461 [-] UCSC Ensembl
Mir-450-P1 CM009179.1: 111015538-111015594 [-] UCSC Ensembl
Mir-542-v1 CM009179.1: 111016323-111016381 [-] UCSC Ensembl
Mir-15-P2c CM009179.1: 111021117-111021179 [-] UCSC Ensembl
Mir-15-P1c CM009179.1: 111021472-111021530 [-] UCSC Ensembl

Seed

UUUGCAA

Precursor
(pre-Mir +30nt flank)

UAAAGUGAUAAAAGGAAGGUACAAAAUUAUUUUUGCAAUAUGUUCCUGAAUAUGUAAUAUAAGUGUAUUGGGAACAUUUUGCAUCCAUAGUUUUGUAUCAAUAUUUAGAGAAAAGGCU

Get precursor sequence

Structure

        10          20        30        40        50         
UAAAGUGAUAAAAGGAA--|            UUU     U        G     GUAAU 
                   GGUACAAAAUUAU   UGCAA AUGUUCCU AAUAU     \
                   CUAUGUUUUGAUA   ACGUU UACAAGGG UUAUG     A
UCGGAAAAGAGAUUUAUAA^            CCU     U        -     UGAAU 
      110       100        90        80        70         60