MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-1247

Family name MIR-1247 (all species)
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1247-v1  Cfa-Mir-1247  Cja-Mir-1247  Cpo-Mir-1247  Dno-Mir-1247  Ete-Mir-1247  Hsa-Mir-1247  Laf-Mir-1247  Mml-Mir-1247  Mmr-Mir-1247  Mmu-Mir-1247  Ocu-Mir-1247  Pab-Mir-1247  Rno-Mir-1247 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009171.1: 43798914-43798971 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1247-v1)		 Mir-1247-v2 CM009171.1: 43798913-43798972 [-] UCSC Ensembl
Mir-1247-v1 CM009171.1: 43798914-43798971 [-] UCSC Ensembl
Variant

Eca-Mir-1247-v1
Seed CCCGUCC
Precursor
(pre-Mir +30nt flank)		 
UCGCACGGCGCGGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUUGCUCUCUGCCCCGGGAACGUCGAGACUGGAGCGCCCGAGCUGAGCCACCUUCGCCGACCCCG
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Structure
        10        20          30        40        50         
UCGCACGGCGCGGCCCCGGCC-  -|      A  C   C  U    C     ACGUUGC 
                      GC CGGGCGC CC GUC CG GCGU CCCGG       \
                      CG GCCCGCG GG CAG GC UGCA GGGCC       U
GCCCCAGCCGCUUCCACCGAGU  A^      A  U   A  -    A     CCGUCUC 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-1247-v1_5p
mirBase accessionNone
Sequence 
0- ACCCGUCCCGUGCGUCCCCGGA -22
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Star sequence

Eca-Mir-1247-v1_3p*
mirBase accessionNone
Sequence 
37- CGGGAACGUCGAGACUGGAGC -58
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Variant

Eca-Mir-1247-v2
Seed ACCCGUC
Precursor
(pre-Mir +30nt flank)		 
CUCGCACGGCGCGGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUUGCUCUCUGCCCCGGGAACGUCGAGACUGGAGCGCCCGAGCUGAGCCACCUUCGCCGACCCCGA
Get precursor sequence
Structure
        10            20        30        40        50          
CUCGCACGGCGCGGCCC----|   CGC       A  C   C  U    C     ACGUUGC 
                     CGGC   CGGGCGC CC GUC CG GCGU CCCGG       \
                     GUCG   GCCCGCG GG CAG GC UGCA GGGCC       U
AGCCCCAGCCGCUUCCACCGA^   A--       A  U   A  -    A     CCGUCUC 
.       110       100          90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-1247-v2_5p
mirBase accessionNone
Sequence 
0- CACCCGUCCCGUGCGUCCCCGGA -23
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Star sequence

Eca-Mir-1247-v2_3p*
mirBase accessionNone
Sequence 
38- CGGGAACGUCGAGACUGGAGCG -60
Get sequence