MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-1247

Family name MIR-1247 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1247-v1  Cfa-Mir-1247  Cpo-Mir-1247  Dno-Mir-1247  Eca-Mir-1247-v1  Ete-Mir-1247  Hsa-Mir-1247  Laf-Mir-1247  Mml-Mir-1247  Mmr-Mir-1247  Mmu-Mir-1247  Ocu-Mir-1247  Pab-Mir-1247  Rno-Mir-1247 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 132392983-132393040 [-] UCSC Ensembl
Seed CCCGUCC
Precursor
(pre-Mir +30nt flank)		 
UCGCCCAGCACAGCCCCGGCCGCCGGGCGCACCCGUCCCGUUCGUCCCCGGACGUUGUUCUGUACCCCGGGAACGUCGAGACUGGAGCGCCCGAACUGAGCCACCUUCGUGGACCCCG
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Structure
        10        20          30        40        50         
UCGCCCAGCACAGCCCCGGCCGC--|      A  C   C  UU   C     ACGUUGU 
                         CGGGCGC CC GUC CG  CGU CCCGG       \
                         GCCCGCG GG CAG GC  GCA GGGCC       U
GCCCCAGGUGCUUCCACCGAGUCAA^      A  U   A  U-   A     CCAUGUC 
      110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-1247_5p (predicted)
mirBase accessionNone
Sequence 
0- ACCCGUCCCGUUCGUCCCCGGA -22
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Star sequence

Cja-Mir-1247_3p* (predicted)
mirBase accessionNone
Sequence 
37- CGGGAACGUCGAGACUGGAGC -58
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