| MirGeneDB ID | Cpo-Mir-1247 |
|---|
| Family name |
MIR-1247 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-1247
|
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| Paralogues |
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| Orthologues |
Bta-Mir-1247-v1
Cfa-Mir-1247
Cja-Mir-1247
Dno-Mir-1247
Eca-Mir-1247-v1
Ete-Mir-1247
Hsa-Mir-1247
Laf-Mir-1247
Mml-Mir-1247
Mmr-Mir-1247
Mmu-Mir-1247
Ocu-Mir-1247
Pab-Mir-1247
Rno-Mir-1247
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(cavPor3) |
scaffold_111: 1834425-1834482 [-]
UCSC
|
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| Seed |
CCCGUCC |
|---|
Precursor
(pre-Mir +30nt flank) |
CUCGCCCGCGCAGCCCCGGCCGCCGGGCGCACCCGUCCCGUUCGUCCCCGGACGUUGCUCUGGGCCCCGGGAGCGUCGAGACUGGAGCGCCCGAACGCAGCCACCUUCGCGGACCCGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUCGCCCGCGCAGCCCCG--| CGC A C C UU UC ACGUUGC
GC CGGGCGC CC GUC CG CG CCCGG \
CG GCCCGCG GG CAG GC GC GGGCC U
AGCCCAGGCGCUUCCACCGA^ CAA A U A U- GA CCGGGUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Mature sequence |
Cpo-Mir-1247_5p |
| mirBase accession | MIMAT0047405 |
|---|
| Sequence |
0- ACCCGUCCCGUUCGUCCCCGGA -22
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-1247_3p* |
| mirBase accession | MIMAT0047406 |
|---|
| Sequence |
37- CGGGAGCGUCGAGACUGGAGC -58
Get sequence
|
|---|
