| MirGeneDB ID | Dma-Mir-9-o15 |
|---|
| Family name |
MIR-9 (all species) |
|---|
| Seed |
CUUUGGU |
|---|
| Species |
Large common water flea (Daphnia magna) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Dma-Mir-9-o16
|
|---|
| Orthologues |
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cbr-Mir-9-P15
Cel-Mir-9-P15
Cin-Mir-9
Cte-Mir-9
Dpu-Mir-9-o15
Esc-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Npo-Mir-9
Obi-Mir-9
Ovu-Mir-9
Pmi-Mir-9
Spu-Mir-9
Xbo-Mir-9
|
|---|
| Node of Origin (locus) |
Daphnia
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(DMA_ASM399081) |
NC_046179.1: 9004931-9004991 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUUGCAUGUGUCGUCAUGGCGCUGCUUUUUUCUUUGGUUAUCUAGCUGUAUGAGUGUUAGAAGACGUCAUAAAGCUAGGUUACCAAAGUUAAGAACUGCCCCUCUUCGUCGGCGUUCUCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUGCAUGUGUCGUCAU----| CUG UUUU U G GUGUUA
GGCG CUU CUUUGGU AUCUAGCU UAUGA \
CCGU GAA GAAACCA UGGAUCGA AUACU G
UACUCUUGCGGCUGCUUCUCC^ CAA UU-- U A GCAGAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| 01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Dma-Mir-9-o15_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
|---|
| Star sequence |
Dma-Mir-9-o15_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- AUAAAGCUAGGUUACCAAAGUUA -61
Get sequence
|
|---|
