| MirGeneDB ID | Dma-Mir-9-o16 |
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| Family name |
MIR-9 (all species) |
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| Seed |
CUUUGGU |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
Dma-Mir-9-o15
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| Orthologues |
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cbr-Mir-9-P16
Cel-Mir-9-P16
Cin-Mir-9
Cte-Mir-9
Dpu-Mir-9-o16
Esc-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Npo-Mir-9
Obi-Mir-9
Ovu-Mir-9
Pmi-Mir-9
Spu-Mir-9
Xbo-Mir-9
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Bilateria
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Genome context
(DMA_ASM399081) |
NC_046175.1: 6286883-6286941 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AACCAUAUGUUUUAUUCAUAUUUGCUUGUUUCUUUGGUGGUCUAGCUGUAUGAGGUUUUUAAGUUCAUAAAGCUAGAUCAGCAAGGCAACAAGUGAAGUUGUUUUCAACUACACUUUUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AACCAUAUGUUUUAUUCAUA--| UG U G G GGUUU
UU CUUGUU CUUUG UGGUCUAGCU UAUGA \
AA GAACAA GGAAC ACUAGAUCGA AUACU U
AUUUUCACAUCAACUUUUGUUG^ GU C G A UGAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Dma-Mir-9-o16_5p |
| mirBase accession | None |
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| Sequence |
0- UCUUUGGUGGUCUAGCUGUAUGA -23
Get sequence
|
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| Star sequence |
Dma-Mir-9-o16_3p* |
| mirBase accession | None |
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| Sequence |
36- AUAAAGCUAGAUCAGCAAGGCAA -59
Get sequence
|
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