MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-3085

Family name MIR-3085 (all species)
Seed CUGGCUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-3085
Paralogues
Orthologues Bta-Mir-3085  Cfa-Mir-3085  Dno-Mir-3085  Ete-Mir-3085  Hsa-Mir-3085  Mml-Mir-3085  Mmu-Mir-3085  Ocu-Mir-3085  Rno-Mir-3085 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_1: 31517489-31517549 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUGUACACAGCUUCCAGCCCUGCUCUGGGAAGGCGCCAUUCUGAGGGCCAGGAGUUUGAUUAUGAGUCACUCUGGCUGCUAUGGCCCCUCCCAGGGCCUGGGGAUCACACCCAGGCUUGUG
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Structure
        10          20         30        40        50        60  
AUGUACACAGCUUCCAG--   U-|        A  C     UCUGAG      G   UUGAUU 
                   CCC  GCUCUGGGA GG GCCAU      GGCCAG AGU      \
                   GGG  CGGGACCCU CC CGGUA      UCGGUC UCA      A
GUGUUCGGACCCACACUAG   UC^        C  -     UCG---      -   CUGAGU 
 .       110       100        90         80            70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cpo-Mir-3085_5p* (predicted)

mirBase accessionMIMAT0047435
Sequence
0- AGGCGCCAUUCUGAGGGCCAGGAGU -25
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Mature sequence

Cpo-Mir-3085_3p

mirBase accessionMIMAT0047436
Sequence
40- UCUGGCUGCUAUGGCCCCUCC -61
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