MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-484

Family name MIR-484 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-484  Cfa-Mir-484  Dno-Mir-484  Eca-Mir-484  Hsa-Mir-484  Laf-Mir-484  Mml-Mir-484  Mmr-Mir-484-P1  Mmr-Mir-484-P2  Mmu-Mir-484  Ocu-Mir-484  Pab-Mir-484  Rno-Mir-484 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021926.1: 11306719-11306775 [+] UCSC Ensembl
Seed CAGGCUC
Precursor
(pre-Mir +30nt flank)		 
UCCUCUCCGCGCGGGGCAUGCUGGGAACCCCGGGGGGGGCGGGGCCUCGCGGCCCUGCAGCCUCGUCAGGCUCAGUCCCCUCCCGAUAAACCCCUAAAUAGGGACUUUCCCGGGGAG
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Structure
        10        20          30         40        50       
UCCUCUCCGCGCGGGGCAUGCU--   AACCC    -|     G      C   GCCCU 
                        GGG     CGGG GGGGGC GGGCCU GCG     G
                        CCC     GCCC CCCCUG CUCGGA UGC     C
GAGGGGCCCUUUCAGGGAUAAAUC   AAAUA    U^     A      C   UCCGA 
     110       100        90        80        70        60
Deep sequencing
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CommentAs a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. Mirbase has the wrong end annoated as the mature arm (Babiarz et al. 2008).
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Cja-Mir-484_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGGGGGGGGCGGGGCCUCGCG -21
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Mature sequence

Cja-Mir-484_3p
mirBase accessionNone
Sequence 
35- UCAGGCUCAGUCCCCUCCCGAU -57
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