MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-1911

Family name MIR-1911 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1911  Cfa-Mir-1911  Eca-Mir-1911  Hsa-Mir-1911  Mml-Mir-1911  Mmr-Mir-1911  Ocu-Mir-1911  Pab-Mir-1911 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 107045408-107045466 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1911)		 Mir-1298 CM021937.1: 107017742-107017817 [+] UCSC Ensembl
Mir-1911 CM021937.1: 107045408-107045466 [+] UCSC Ensembl
Mir-448 CM021937.1: 107095147-107095225 [+] UCSC Ensembl
Seed GAGUACC
Precursor
(pre-Mir +30nt flank)		 
GGUAUCCAUCAUCAUUUGCUCAGCAUCUGCUGAGUACCGCCAUGUCUGUUGGGCAUCCACAGUCUCCCACCAGGCAUUGUGGUCUCUGUAGAUGCUUUGCCAUUUCACCACCGGUGCCU
Get precursor sequence
Structure
        10          20        30        40        50         
GGUAUCCAUCAUCAUUU--| UC         U   U     C       U    CAUCC 
                   GC  AGCAUCUGC GAG ACCGC AUGUCUG UGGG     A
                   CG  UCGUAGAUG CUC UGGUG UACGGAC ACCC     C
UCCGUGGCCACCACUUUAC^ UU         U   -     U       C    UCUGA 
       110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-1911_5p (predicted)
mirBase accessionNone
Sequence 
0- UGAGUACCGCCAUGUCUGUUGGG -23
Get sequence
Star sequence

Cja-Mir-1911_3p* (predicted)
mirBase accessionNone
Sequence 
37- CACCAGGCAUUGUGGUCUCUGU -59
Get sequence