MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-92-o68

Family name MIR-92 (all species)
Seed AUUGCAC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-235a
Paralogues Cbr-Mir-92-o67 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. briggsae
Node of Origin (family) Bilateria
Genome context
(CB4)
I: 10817709-10817779 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o68)
Mir-92-o68 I: 10817709-10817779 [-] Ensembl
Mir-92-o67 I: 10817861-10817923 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUAUCUGAAAAAUCUGAAAAUUCCGAUCCGGCCAUGGCCAAUUGCAUAUAUUGCUUUUACUUUUUCAAAAUGCGAAUAUUGCACUUUCCCUGGCCAGAUCUGAUAGUAAGAUUUGAGGGAAAUCUAGGU
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Structure
        10        20           30        40        50        60     
UCCUAUCUGAAAAAUCUGAAAAU---| C    C     U  CC  U    U     GCUUUUACUU 
                          UC GAUC GGCCA GG  AA UGCA AUAUU          U
                          AG CUAG CCGGU CC  UU ACGU UAUAA          U
UGGAUCUAAAGGGAGUUUAGAAUGAU^ U    A     -  CU  C    -     GCGUAAAACU 
 .       120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-92-o68_5p*

mirBase accessionNone
Sequence
0- CGGCCAUGGCCAAUUGCAUAUAUU -24
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Mature sequence

Cbr-Mir-92-o68_3p

mirBase accessionMIMAT0004295
Sequence
48- UAUUGCACUUUCCCUGGCCAGAU -71
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