MirGeneDB 3.0

MirGeneDB ID

Cbr-Mir-92-o67

Family name MIR-92 (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-235b
Paralogues Cbr-Mir-92-o68 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. briggsae
Node of Origin (family) Bilateria
Genome context
(CB4)
I: 10817861-10817923 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o67)
Mir-92-o68 I: 10817709-10817779 [-] Ensembl
Mir-92-o67 I: 10817861-10817923 [-] Ensembl
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)
CCCUAUUCUAAAAAUCUGAAAUCUUGGAUCAGGCUCUGGUCAUGUGCAUAUAUUGCGCUAUAUAUGCUAAUAUUGCACUUGACCAUGGCCUCGUCUAGAAAGUAAGACAGUUUCAGAAAGGUA
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Structure
        10        20           30        40        50        60 
CCCUAUUCUAAAAAUCUGAAA---|  U    C     C      U     U     GCGCUA 
                        UCU GGAU AGGCU UGGUCA GUGCA AUAUU      U
                        AGA UCUG UCCGG ACCAGU CACGU UAUAA      A
AUGGAAAGACUUUGACAGAAUGAA^  -    C     U      U     -     UCGUAU 
 120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-92-o67_5p*

mirBase accessionMIMAT0011473
Sequence
0- AGGCUCUGGUCAUGUGCAUAUAUU -24
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Mature sequence

Cbr-Mir-92-o67_3p

mirBase accessionMIMAT0011474
Sequence
40- UAUUGCACUUGACCAUGGCCUCG -63
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