MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-1247

Family name MIR-1247 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-1247
Paralogues Bta-Mir-1247-v1 
Orthologues Cfa-Mir-1247  Cja-Mir-1247  Cpo-Mir-1247  Dno-Mir-1247  Ete-Mir-1247  Hsa-Mir-1247  Laf-Mir-1247  Mml-Mir-1247  Mmr-Mir-1247  Mmu-Mir-1247  Ocu-Mir-1247  Pab-Mir-1247  Rno-Mir-1247 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037348.1: 66493376-66493435 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1247-v2)		 Mir-1247-v2 NC_037348.1: 66493376-66493435 [-] UCSC Ensembl
Mir-1247-v1 NC_037348.1: 66493377-66493434 [-] UCSC Ensembl
Variant

Bta-Mir-1247-v2
Seed ACCCGUC
Precursor
(pre-Mir +30nt flank)		 
CUCGGCCGGCGCAGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUCGCUGUCUGCCCCGGGAACGUCGGGACUGGAGCGCCCGCGCUGAGCCACCUUCACCGACCCAGA
Get precursor sequence
Structure
        10            20        30        40        50          
CUCGGCCGGCGCAGCCC----|   C  C      A  C      U    C     ACGUCGC 
                     CGGC GC GGGCGC CC GUCCCG GCGU CCCGG       \
                     GUCG CG CCCGCG GG CAGGGC UGCA GGGCC       U
AGACCCAGCCACUUCCACCGA^   -  -      A  U      -    A     CCGUCUG 
.       110       100          90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-1247-v2_5p
mirBase accessionMIMAT0025549
Sequence 
0- CACCCGUCCCGUGCGUCCCCGGA -23
Get sequence
Proposed targets TargetScanVert: bta-miR-1247-5p
Star sequence

Bta-Mir-1247-v2_3p*
mirBase accessionMIMAT0025550
Sequence 
38- CGGGAACGUCGGGACUGGAGCG -60
Get sequence
Proposed targets TargetScanVert: bta-miR-1247-3p
Variant

Bta-Mir-1247-v1
Seed CCCGUCC
Precursor
(pre-Mir +30nt flank)		 
UCGGCCGGCGCAGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUCGCUGUCUGCCCCGGGAACGUCGGGACUGGAGCGCCCGCGCUGAGCCACCUUCACCGACCCAG
Get precursor sequence
Structure
        10        20          30        40        50         
UCGGCCGGCGCAGCCCCGGCC-  -|      A  C      U    C     ACGUCGC 
                      GC CGGGCGC CC GUCCCG GCGU CCCGG       \
                      CG GCCCGCG GG CAGGGC UGCA GGGCC       U
GACCCAGCCACUUCCACCGAGU  C^      A  U      -    A     CCGUCUG 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-1247-v1_5p
mirBase accessionMIMAT0025549
Sequence 
0- ACCCGUCCCGUGCGUCCCCGGA -22
Get sequence
Proposed targets TargetScanVert: bta-miR-1247-5p
Star sequence

Bta-Mir-1247-v1_3p*
mirBase accessionMIMAT0025550
Sequence 
37- CGGGAACGUCGGGACUGGAGC -58
Get sequence
Proposed targets TargetScanVert: bta-miR-1247-3p