MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-2-o140b

Family name MIR-2 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-2-o139a  Ava-Mir-2-o139b-v1  Ava-Mir-2-o140a  Ava-Mir-2-o141a  Ava-Mir-2-o141b 
Orthologues Gsp-Mir-2  Pca-Mir-2-o140  Ple-Mir-2 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075493.1: 8116038-8116099 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-o140b)		 Mir-2-o140b CP075493.1: 8116038-8116099 [+] Ensembl
Mir-2-o141b CP075493.1: 8116222-8116283 [+] Ensembl
Seed AUCACAG
Precursor
(pre-Mir +30nt flank)		 
UUUUUUUUCUUUACAUUAUCUUUAUUUGUGUCAGCAAAGAGAUCGUGCUAUGUGUAAACCGAAGUUCAUAUCACAGUCUUGCUUUGUUGACAUGAAACGAACAUUCAUCGUAUGCAAUAUAC
Get precursor sequence
Structure
        10        20          30          40        50         
UUUUUUUUCUUUACAUUAUCUUUA--  UG           --|   C   C    UGUAAA 
                          UU  UGUCAGCAAAG  AGAU GUG UAUG      C
                          AA  ACAGUUGUUUC  UCUG CAC AUAC      C
CAUAUAACGUAUGCUACUUACAAGCA  GU           GU^   A   U    UUGAAG 
120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
To To
Star sequence

Ava-Mir-2-o140b_5p*
mirBase accessionNone
Sequence 
0- UCAGCAAAGAGAUCGUGCUAUG -22
Get sequence
Mature sequence

Ava-Mir-2-o140b_3p
mirBase accessionNone
Sequence 
38- UAUCACAGUCUUGCUUUGUUGACA -62
Get sequence