MirGeneDB

MirGeneDB ID

Aca-Mir-217-v2

Family name MIR-217 (all species)
Seed UACUGCA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-217
Paralogues Aca-Mir-217-v1 
Orthologues Ami-Mir-217-v2  Bfl-Mir-217  Bta-Mir-217-v2  Cfa-Mir-217-v2  Cli-Mir-217-v2  Cpi-Mir-217-v2  Cpo-Mir-217-v2  Dno-Mir-217-v2  Dre-Mir-217-v2  Ete-Mir-217-v2  Gga-Mir-217-v2  Hsa-Mir-217-v2  Mdo-Mir-217  Mml-Mir-217-v2  Mmu-Mir-217-v2  Oan-Mir-217-v2  Ocu-Mir-217-v2  Rno-Mir-217-v2  Sha-Mir-217-v2  Sto-Mir-217-v2  Tgu-Mir-217-v2  Xtr-Mir-217-v2 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(anoCar2)
1: 256233879-256233939 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-217-v2)
Mir-217-v2 1: 256233879-256233939 [-] UCSC Ensembl
Mir-217-v1 1: 256233880-256233938 [-] UCSC Ensembl
Mir-216-P1a 1: 256236305-256236366 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUAGCCUUCAGAGCUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGGGAAUAAUCAUGUACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAACAUCAAUUAUGUUC
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Structure
        10        20          30        40        50        60
GUGUAGCCUUCAGAGCUUUU--|    CGC  A  C     C          U  GGAAUA 
                      GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                      CUACG   UC GU ACGUA UCCUUGACUA CC      U
CUUGUAUUAACUACAAACAAAU^    ACU  C  U     A          -  AUGUAC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-217-v2_5p

MirBase accessionMIMAT0021878
Sequence
0- AUACUGCAUCAGGAACUGAUUGG -23
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Star sequence

Aca-Mir-217-v2_3p*

MirBase accessionMIMAT0021879
Sequence
39- AUCAGUUCCUAAUGCAUUGCCU -61
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