MirGeneDB 3.0
MirGeneDB ID

Aca-Mir-142-P4

Family name MIR-142 (all species)
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-142
Paralogues Aca-Mir-142-P4-v1 
Orthologues Ami-Mir-142-P4-v1  Cpi-Mir-142-P4-v1  Dre-Mir-142-P4-v1  Gja-Mir-142-P4-v1  Gmo-Mir-142-P4-v1  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Tni-Mir-142-P4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)		 GL343287.1: 1405171-1405231 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P4-v3)		 Mir-142-P4-v4 GL343287.1: 1405169-1405233 [-] UCSC Ensembl
Mir-142-P4-v1 GL343287.1: 1405171-1405231 [-] UCSC Ensembl
Mir-142-P4-v2 GL343287.1: 1405171-1405231 [-] UCSC Ensembl
Mir-142-P4-v3 GL343287.1: 1405171-1405231 [-] UCSC Ensembl
Variant

Aca-Mir-142-P4-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
AGCUGUAUUUUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCCUGUGCCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCAACAC
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Structure
        10          20        30        40        50          
AGCUGUAUUUUUAAGGA--|    G                 A         UAAACGCCU 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
CACAACGGAGGCAACGAGU^    G                 C         UGAACCCGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-142-P4-v3_5p*
mirBase accessionMIMAT0021767
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Aca-Mir-142-P4-v3_3p
mirBase accessionMIMAT0021768
Sequence 
38- UGUAGUGUUUCCUACUUUAUGGA -61
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Variant

Aca-Mir-142-P4-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
AGCUGUAUUUUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCCUGUGCCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCAACAC
Get precursor sequence
Structure
        10          20        30        40        50          
AGCUGUAUUUUUAAGGA--|    G                 A         UAAACGCCU 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
CACAACGGAGGCAACGAGU^    G                 C         UGAACCCGU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-142-P4-v1_5p
mirBase accessionMIMAT0021767
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Aca-Mir-142-P4-v1_3p*
mirBase accessionMIMAT0021768
Sequence 
40- UAGUGUUUCCUACUUUAUGGA -61
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Variant

Aca-Mir-142-P4-v2
Seed UAGUGUU
Precursor
(pre-Mir +30nt flank)		 
AGCUGUAUUUUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCCUGUGCCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCAACAC
Get precursor sequence
Structure
        10          20        30        40        50          
AGCUGUAUUUUUAAGGA--|    G                 A         UAAACGCCU 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
CACAACGGAGGCAACGAGU^    G                 C         UGAACCCGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-142-P4-v2_5p*
mirBase accessionMIMAT0021767
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Mature sequence

Aca-Mir-142-P4-v2_3p
mirBase accessionMIMAT0021768
Sequence 
39- GUAGUGUUUCCUACUUUAUGGA -61
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Variant

Aca-Mir-142-P4-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
GAAGCUGUAUUUUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCCUGUGCCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCAACACAA
Get precursor sequence
Structure
        10          20        30        40        50        60  
GAAGCUGUAUUUUUAAGG--|     G                 A         UAAACGCCU 
                    ACAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                    UGUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
AACACAACGGAGGCAACGAG^     G                 C         UGAACCCGU 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-142-P4-v4_5p
mirBase accessionMIMAT0021767
Sequence 
0- UCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Aca-Mir-142-P4-v4_3p*
mirBase accessionMIMAT0021768
Sequence 
43- AGUGUUUCCUACUUUAUGGAUG -65
Get sequence