Mir
Gene
DB
2.1
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120 microRNA genes with seed UUGGCAC
Sort by genome coordinates
Motifs
MirGeneDB ID
MiRBase ID
Family
Seed
5p accession
3p accession
Chromosome
Start
End
Strand
Node of origin (locus)
Node of origin (family)
3' NTU
▲
UG
UGUG
CNNC
Bfl-Mir-4871
bfl-mir-4871
MIR-4871
UUGGCAC
MIMAT0020112
MIMAT0020113
NW_023365955.1
83221
83283
-
Branchiostoma
Branchiostoma
No
1
Bla-Mir-4871
None
MIR-4871
UUGGCAC
None
None
Sc0000001
4527408
4527470
+
Branchiostoma
Branchiostoma
No
1
Cel-Mir-791
cel-mir-791
MIR-791
UUGGCAC
MIMAT0020350
MIMAT0004226
chrX
5809361
5809423
+
Chromadorea
Chromadorea
No
1
Cbr-Mir-791
cbr-mir-791
MIR-791
UUGGCAC
None
MIMAT0004293
X
11146148
11146211
+
Chromadorea
Chromadorea
No
Asu-Mir-791
asu-mir-791
MIR-791
UGGUCUG
MIMAT0021529
MIMAT0021530
Scaffold287
265477
265534
-
Chromadorea
Chromadorea
No
1
Hsa-Mir-1271
hsa-mir-1271
MIR-1271
UUGGCAC
MIMAT0005796
MIMAT0022712
chr5
176367960
176368017
+
Eutheria
Eutheria
No
Mml-Mir-1271
mml-mir-1271
MIR-1271
UUGGCAC
MIMAT0024315
MIMAT0027108
chr6
174823249
174823306
+
Eutheria
Eutheria
No
Cpo-Mir-1271
cpo-mir-1271
MIR-1271
UUGGCAC
MIMAT0047411
MIMAT0047412
scaffold_17
22117662
22117719
+
Eutheria
Eutheria
No
Cfa-Mir-1271
cfa-mir-1271
MIR-1271
UUGGCAC
MIMAT0006685
None
chr4
36951021
36951078
-
Eutheria
Eutheria
No
Bta-Mir-1271
bta-mir-1271
MIR-1271
UUGGCAC
MIMAT0009975
None
NC_037334.1
37843340
37843397
+
Eutheria
Eutheria
No
Tgu-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
gnl|ti|1263877921
262
325
-
Bilateria
Bilateria
No
Sto-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
BFAA01006258.1
17893
17956
-
Bilateria
Bilateria
No
1
Hsa-Mir-96-P1
hsa-mir-96
MIR-96
UUGGCAC
MIMAT0000095
MIMAT0004510
chr7
129774698
129774761
-
Bilateria
Bilateria
No
1
1
Ami-Mir-96-P1
ami-mir-96
MIR-96
UUGGCAC
MIMAT0038106
MIMAT0038107
NW_017709854.1
28194128
28194191
+
Bilateria
Bilateria
No
1
Cmi-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
KI635871.1
2247622
2247685
+
Bilateria
Bilateria
No
1
Mml-Mir-96-P1
mml-mir-96
MIR-96
UUGGCAC
MIMAT0002784
None
chr3
155860132
155860195
-
Bilateria
Bilateria
No
1
1
Mmu-Mir-96-P1
mmu-mir-96
MIR-96
UUGGCAC
MIMAT0000541
MIMAT0017021
chr6
30169465
30169528
-
Bilateria
Bilateria
No
1
1
Rno-Mir-96-P1
rno-mir-96
MIR-96
UUGGCAC
MIMAT0000818
MIMAT0017110
chr4
57463385
57463448
-
Bilateria
Bilateria
No
1
1
Pbv-Mir-96-P1
pbv-mir-96
MIR-96
UUGGCAC
MIMAT0038891
MIMAT0038892
KE958924.1
47981
48044
-
Bilateria
Bilateria
No
1
Cin-Mir-96-P1
cin-mir-96
MIR-96
UUGGCAC
MIMAT0016403
MIMAT0016404
HT000094.1
542651
542705
-
Bilateria
Bilateria
No
1
Gja-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
NW_015171061.1
26651
26714
+
Bilateria
Bilateria
No
1
Bfl-Mir-96-P1
bfl-mir-96
MIR-96
UUGGCAC
MIMAT0009480
MIMAT0019144
NC_049983.1
18505918
18505977
+
Bilateria
Bilateria
No
Ocu-Mir-96-P1
ocu-mir-96
MIR-96
UUGGCAC
MIMAT0048178
MIMAT0048179
chr7
14827059
14827122
+
Bilateria
Bilateria
No
1
1
Bla-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
Sc0000043
397228
397287
-
Bilateria
Bilateria
No
Cfa-Mir-96-P1
cfa-mir-96
MIR-96
UUGGCAC
MIMAT0009861
None
chr14
7068767
7068830
+
Bilateria
Bilateria
No
1
1
Sko-Mir-96-P1
sko-mir-96
MIR-96
UUGGCAC
MIMAT0009622
MIMAT0019156
NW_003114962.1
36626
36685
+
Bilateria
Bilateria
No
1
Isc-Mir-96-P1
isc-mir-96
MIR-96
UUGGCAC
MIMAT0012708
None
DS633978
113225
113285
+
Bilateria
Bilateria
No
Bta-Mir-96-P1
bta-mir-96
MIR-96
UUGGCAC
MIMAT0009388
None
NC_037331.1
93595936
93595999
-
Bilateria
Bilateria
No
1
1
Xtr-Mir-96-P1
xtr-mir-96
MIR-96
UUGGCAC
MIMAT0003661
None
chr3
77400820
77400883
+
Bilateria
Bilateria
No
Dno-Mir-96-P1
dno-mir-96
MIR-96
UUGGCAC
MIMAT0047590
MIMAT0047591
JH568910
1128922
1128985
-
Bilateria
Bilateria
No
1
1
Spu-Mir-96-P1
spu-mir-96
MIR-96
UUGGCAC
MIMAT0009665
None
AAGJ06000006.1
25937913
25937986
+
Bilateria
Bilateria
No
1
1
Ete-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
JH980321
22675133
22675196
-
Bilateria
Bilateria
No
1
1
Pmi-Mir-96-P1
pmi-mir-96
MIR-96
UUGGCAC
MIMAT0032155
None
JH769268.1
99565
99625
+
Bilateria
Bilateria
No
1
Gga-Mir-96-P1
gga-mir-96
MIR-96
UUGGCAC
MIMAT0037540
MIMAT0037541
1
1479737
1479800
-
Bilateria
Bilateria
No
Cli-Mir-96-P1
cli-mir-96
MIR-96
UUGGCAC
MIMAT0038476
MIMAT0038477
scaffold121
1261712
1261775
+
Bilateria
Bilateria
No
Loc-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
LG8
20419908
20419971
-
Bilateria
Bilateria
No
1
Asu-Mir-5350-P1
asu-mir-5350a
MIR-5350
UUGGCAC
MIMAT0021552
MIMAT0021553
Scaffold730
214863
214919
+
A. suum
A. suum
No
1
Xla-Mir-96-P1d
xla-mir-96
MIR-96
UUGGCAC
MIMAT0046615
MIMAT0046616
NC_030729.1
63428529
63428592
-
X. laevis
Bilateria
No
Aae-Mir-96-P2
aae-mir-263b
MIR-96
UUGGCAC
MIMAT0014309
MIMAT0014310
supercont1.28
2323846
2323911
+
Bilateria
Bilateria
No
1
Hme-Mir-96-P2
hme-mir-263b
MIR-96
UUGGCAC
MIMAT0024950
None
HE670415
2372
2433
-
Bilateria
Bilateria
No
1
1
Tca-Mir-96-P2
tca-mir-263b
MIR-96
UUGGCAC
MIMAT0008378
MIMAT0019122
LG3
4855287
4855345
+
Bilateria
Bilateria
No
Obi-Mir-96-P2
None
MIR-96
UUGGCAC
None
None
KQ426020
10541
10601
-
Bilateria
Bilateria
No
1
Bge-Mir-96-P2
None
MIR-96
UUGGCAC
None
None
KZ614838.1
241058
241116
-
Bilateria
Bilateria
No
Ovu-Mir-96-P2
None
MIR-96
UUGGCAC
None
None
RXHP01002940.1
735
795
-
Bilateria
Bilateria
No
Dpu-Mir-96-P2
dpu-mir-263b
MIR-96
UUGGCAC
MIMAT0012650
None
DAPPUscaffold_87
475817
475879
+
Bilateria
Bilateria
No
1
Dma-Mir-96-P2
None
MIR-96
UUGGCAC
None
None
NC_046180.1
10114057
10114119
-
Bilateria
Bilateria
No
1
Cel-Mir-96-P2
cel-mir-790
MIR-96
UUGGCAC
MIMAT0004225
MIMAT0020349
chrIV
5566427
5566488
+
Bilateria
Bilateria
No
Dme-Mir-96-P2
dme-mir-263b
MIR-96
UUGGCAC
MIMAT0000362
MIMAT0020822
3L
15843420
15843480
-
Bilateria
Bilateria
No
1
Asu-Mir-96-P2
asu-mir-228
MIR-96
UUGGCAC
MIMAT0021503
MIMAT0021504
Scaffold583
160776
160838
-
Bilateria
Bilateria
No
Dsi-Mir-96-P2
dsi-mir-263b
MIR-96
UUGGCAC
MIMAT0008871
None
3L
15464158
15464218
-
Bilateria
Bilateria
No
1
Dya-Mir-96-P2
dya-mir-263b
MIR-96
UUGGCAC
MIMAT0009110
None
3L
18445413
18445473
-
Bilateria
Bilateria
No
1
Dan-Mir-96-P2
dan-mir-263b
MIR-96
UUGGCAC
MIMAT0008447
None
scaffold_13337
11320757
11320817
+
Bilateria
Bilateria
No
1
Asu-Mir-5350-P2
asu-mir-5350b
MIR-5350
UUGGCAC
MIMAT0021554
MIMAT0021555
Scaffold1190
38567
38623
-
A. suum
A. suum
No
1
Bla-Mir-96-P2h
None
MIR-96
UUGGCAC
None
None
Sc0000146
19736
19813
-
Branchiostoma
Bilateria
No
1
Cgi-Mir-96-P2l
None
MIR-96
UUGGCAC
None
None
scaffold626
26567
26631
+
C. gigas
Bilateria
No
1
Cbr-Mir-96-P2p
cbr-mir-790-2
MIR-96
UUGGCAC
MIMAT0004292
None
IV
6048235
6048292
+
C. briggsae
Bilateria
No
1
Asu-Mir-5350-P3
asu-mir-5350c
MIR-5350
UUGGCAC
MIMAT0021556
MIMAT0021557
Scaffold1190
38272
38328
-
A. suum
A. suum
No
Asu-Mir-5350-P4
asu-mir-5350d
MIR-5350
UUGGCAC
MIMAT0021558
MIMAT0021559
Scaffold123
289536
289593
-
A. suum
A. suum
No
Asu-Mir-5350-P5
asu-mir-5351
MIR-5350
UUGGCAC
MIMAT0021560
MIMAT0021561
Scaffold95
1540197
1540253
+
A. suum
A. suum
No
Asu-Mir-5350-P6
asu-mir-5354
MIR-5350
CGGGUAU
MIMAT0021568
MIMAT0021569
Scaffold800
97547
97610
-
A. suum
A. suum
No
Gmo-Mir-96-P1a
gmo-mir-96
MIR-96
UUGGCAC
MIMAT0044263
MIMAT0044264
GeneScaffold_4098
12976
13039
+
Clupeocephala
Bilateria
No
1
Mal-Mir-96-P1a
None
MIR-96
UUGGCAC
None
None
KV884729.1
3066031
3066094
-
Clupeocephala
Bilateria
No
1
Dre-Mir-96-P1a
dre-mir-96
MIR-96
UUGGCAC
MIMAT0001811
MIMAT0031956
chr4
15074738
15074801
+
Clupeocephala
Bilateria
No
1
Cgi-Mir-96-P1i
None
MIR-96
UUGGCAC
None
None
scaffold591
1189388
1189446
-
Mollusca
Bilateria
No
1
1
Cfa-Mir-506-P2e
cfa-mir-507b
MIR-506
UUGGCAC
None
MIMAT0034416
chrX
115665393
115665450
-
C. familiaris
Eutheria
No
1
Cgi-Mir-96-P2m
None
MIR-96
UUGGCAC
None
None
scaffold42648
4758
4816
+
C. gigas
Bilateria
No
1
Cbr-Mir-96-P2q
cbr-mir-790-1
MIR-96
UUGGCAC
MIMAT0004292
None
IV
6048856
6048920
+
C. briggsae
Bilateria
No
Sme-Mir-96-P1j
sme-mir-96a
MIR-96
UUGGCAC
MIMAT0011262
MIMAT0012159
NNSW01000022_dd_Smes_g4_22
4678463
4678530
+
S. mediterranea
Bilateria
No
1
Cpo-Mir-506-P2b
cpo-mir-507b
MIR-506
UUGGCAC
MIMAT0047317
MIMAT0047318
scaffold_84
2763265
2763322
+
C. porcellus
Eutheria
No
1
Efe-Mir-96-P2n
None
MIR-96
UUGGCAC
None
None
Efet.01.342161
1259
1320
+
E. fetida
Bilateria
No
Xla-Mir-96-P1c
None
MIR-96
UUGGCAC
None
None
NC_030728.1
77406980
77407043
+
X. laevis
Bilateria
No
Bla-Mir-96-P2g
None
MIR-96
UUGGCAC
None
None
xfSc0001431
1772
1836
+
Branchiostoma
Bilateria
No
Lpo-Mir-96-P1r-v1
None
MIR-96
UUGGCAC
None
None
NW_013665929.1
529176
529236
-
L. polyphemus
Bilateria
No
1
Mmu-Mir-1271
None
MIR-1271
UUGGCAC
None
None
chr13
54578152
54578210
+
Eutheria
Eutheria
Unknown
Rno-Mir-1271
None
MIR-1271
UUGGCAC
None
None
chr17
10572276
10572334
-
Eutheria
Eutheria
Unknown
Dno-Mir-1271
None
MIR-1271
UUGGCAC
None
None
JH562710
929911
929968
+
Eutheria
Eutheria
Unknown
Cpi-Mir-96-P1
cpi-mir-96
MIR-96
UUGGCAC
MIMAT0037707
None
JH584440
1633482
1633545
+
Bilateria
Bilateria
Unknown
Cpo-Mir-96-P1
cpo-mir-96
MIR-96
UUGGCAC
MIMAT0046937
MIMAT0046938
scaffold_11
50142184
50142247
-
Bilateria
Bilateria
Unknown
1
1
Lan-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
LFEI01000069
242267
242326
+
Bilateria
Bilateria
Unknown
1
1
Spt-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
QEPC01000343.1
788151
788214
-
Bilateria
Bilateria
Unknown
Pfl-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
LD345584.1
198910
198968
-
Bilateria
Bilateria
Unknown
1
Mun-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
96-P1_LR594641.1:18226534-18226797
101
164
+
Bilateria
Bilateria
Unknown
Lch-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
JH127218.1
511439
511502
-
Bilateria
Bilateria
Unknown
1
Sha-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
GL861654.1
986305
986368
-
Bilateria
Bilateria
Unknown
1
Xbo-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
scaffold1822
63524
63583
+
Bilateria
Bilateria
Unknown
Mdo-Mir-96-P1
mdo-mir-96
MIR-96
UUGGCAC
MIMAT0004147
None
8
189667862
189667925
-
Bilateria
Bilateria
Unknown
1
Oan-Mir-96-P1
oan-mir-96
MIR-96
UUGGCAC
MIMAT0006803
MIMAT0006804
NC_041737.1
47132591
47132654
-
Bilateria
Bilateria
Unknown
Cte-Mir-96-P1
cte-mir-96
MIR-96
UUGGCAC
MIMAT0009523
None
CAPTEscaffold_181
4334
4396
+
Bilateria
Bilateria
Unknown
1
1
Efe-Mir-96-P1
None
MIR-96
UUGGCAC
None
None
Efet.01.1657145
293
352
+
Bilateria
Bilateria
Unknown
Lpo-Mir-96-P1t
None
MIR-96
UUGGCAC
None
None
NW_013665634.1
1448182
1448242
+
L. polyphemus
Bilateria
Unknown
1
Csc-Mir-96-P1x
None
MIR-96
UUGGCAC
None
None
NW_019385963.1
35587
35647
-
C. sculpturatus
Bilateria
Unknown
1
Npo-Mir-96-P2
None
MIR-96
UUGGCAC
None
None
JACATO010002187.1
172147
172208
+
Bilateria
Bilateria
Unknown
Lan-Mir-96-P2
None
MIR-96
UUGGCAC
None
None
LFEI01000342
90972
91032
-
Bilateria
Bilateria
Unknown
Isc-Mir-96-P2
None
MIR-96
UUGGCAC
None
None
DS633978
112831
112895
+
Bilateria
Bilateria
Unknown
Cte-Mir-96-P2
cte-mir-263
MIR-96
UUGGCAC
MIMAT0009529
None
CAPTEscaffold_522
115197
115256
-
Bilateria
Bilateria
Unknown
1
Lgi-Mir-96-P2
lgi-mir-263a
MIR-96
UUGGCAC
MIMAT0009583
None
LOTGIsca_71
757688
757746
+
Bilateria
Bilateria
Unknown
Ocu-Mir-506-P2
ocu-mir-507
MIR-506
UUGGCAC
MIMAT0048507
MIMAT0048508
chrUn0002
10707176
10707233
-
Eutheria
Eutheria
Unknown
1
Bfl-Mir-96-P2h
bfl-mir-182a
MIR-96
UUGGCAC
MIMAT0009486
None
NC_049980.1
17548107
17548183
-
Branchiostoma
Bilateria
Unknown
1
Tni-Mir-96-P1a
tni-mir-96
MIR-96
UUGGCAC
MIMAT0003092
None
19
3385392
3385455
-
Clupeocephala
Bilateria
Unknown
1
Ebu-Mir-96-P1e
None
MIR-96
UUGGCAC
None
None
FYBX02009823.1
3449915
3449976
-
E. burgeri
Bilateria
Unknown
Npo-Mir-96-P1i
None
MIR-96
UUGGCAC
None
None
JACATO010000647.1
143522
143579
-
Mollusca
Bilateria
Unknown
1
1
Lgi-Mir-96-P1i
lgi-mir-96a
MIR-96
UUGGCAC
MIMAT0009575
None
LOTGIsca_31
795528
795586
+
Mollusca
Bilateria
Unknown
1
Lpo-Mir-96-P1u
None
MIR-96
UUGGCAC
None
None
NW_013665647.1
244610
244669
-
L. polyphemus
Bilateria
Unknown
1
Lpo-Mir-96-P2u
None
MIR-96
UUGGCAC
None
None
NW_013665647.1
245719
245777
-
L. polyphemus
Bilateria
Unknown
Tni-Mir-96-P1b
None
MIR-96
UUGGCAC
None
None
13
5039982
5040043
-
Clupeocephala
Bilateria
Unknown
1
Mal-Mir-96-P1b
None
MIR-96
UUGGCAC
None
None
KV884693.1
181154
181217
+
Clupeocephala
Bilateria
Unknown
1
Ebu-Mir-96-P1f
None
MIR-96
UUGGCAC
None
None
FYBX02009661.1
1087770
1087831
-
E. burgeri
Bilateria
Unknown
1
Lpo-Mir-96-P2r
None
MIR-96
UUGGCAC
None
None
NW_013665929.1
532168
532227
-
L. polyphemus
Bilateria
Unknown
Ebu-Mir-96-P1g
None
MIR-96
UUGGCAC
None
None
FYBX02000166.1
1306588
1306647
-
E. burgeri
Bilateria
Unknown
1
Sme-Mir-96-P1k
sme-mir-96b
MIR-96
UUGGCAC
MIMAT0011273
MIMAT0012163
NNSW01000112_dd_Smes_g4_112
1967642
1967703
-
S. mediterranea
Bilateria
Unknown
1
Lpo-Mir-96-P1s
None
MIR-96
UUGGCAC
None
None
NW_013666424.1
67024
67083
+
L. polyphemus
Bilateria
Unknown
1
Csc-Mir-96-P1w
None
MIR-96
UUGGCAC
None
None
NW_019385290.1
225058
225118
+
C. sculpturatus
Bilateria
Unknown
1
Bfl-Mir-96-P2g
None
MIR-96
UUGGCAC
None
None
NC_049980.1
17527696
17527760
-
Branchiostoma
Bilateria
Unknown
Efe-Mir-96-P2o
None
MIR-96
UUGGCAC
None
None
Efet.01.217172
1570
1639
+
E. fetida
Bilateria
Unknown
1
Csc-Mir-96-P2w
None
MIR-96
UUGGCAC
None
None
NW_019385290.1
224908
224968
+
C. sculpturatus
Bilateria
Unknown
1
Pma-Mir-96-P1o1
pma-mir-96a
MIR-96
UUGGCAC
MIMAT0019436
None
NC_046104.1
2252300
2252362
-
P. marinus
Bilateria
Unknown
1
1
Pma-Mir-96-P1o2
None
MIR-96
UUGGCAC
None
None
NC_046114.1
7245787
7245851
+
P. marinus
Bilateria
Unknown
1
Lpo-Mir-96-P2t-v1
None
MIR-96
UUGGCAC
None
None
NW_013665634.1
1447496
1447554
+
L. polyphemus
Bilateria
Unknown
1
Lpo-Mir-96-P2v-v1
None
MIR-96
UUGGCAC
None
None
NW_013665621.1
1338513
1338571
-
L. polyphemus
Bilateria
Unknown
Lpo-Mir-96-P2s-v1
None
MIR-96
UUGGCAC
None
None
NW_013666424.1
65543
65602
+
L. polyphemus
Bilateria
Unknown
1
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