MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-4871

Family name MIR-4871 (all species)
Seed UUGGCAC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4871
Paralogues
Orthologues Bla-Mir-4871 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NW_023365955.1: 83221-83283 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UUGAAGACUCAAGUGUUCCACCUGCUGAACUCUGAAGUACCUGUUGCCAAAGGCGCUCAUAGUGACAAACCUUUGGCACUGGUACUUUGGAGUAAAGAUGGUGACAAUUCAUCUCAUCUGCAG
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Structure
        10          20        30        40        50        60 
UUGAAGACUCAAGUGUUC--|   UG  GA    UG       U  U        CGCUCAU 
                    CACC  CU  ACUC  AAGUACC GU GCCAAAGG       A
                    GUGG  GA  UGAG  UUCAUGG CA CGGUUUCC       G
GACGUCUACUCUACUUAACA^   UA  AA    GU       U  -        AAACAGU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bfl-Mir-4871_5p*

mirBase accessionMIMAT0020112
Sequence
0- UCUGAAGUACCUGUUGCCAAAGG -23
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Mature sequence

Bfl-Mir-4871_3p

mirBase accessionMIMAT0020113
Sequence
41- UUUGGCACUGGUACUUUGGAGU -63
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