MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-87-o41

Family name MIR-87 (all species)
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues Tur-Mir-87-o38  Tur-Mir-87-o39  Tur-Mir-87-o40 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) T. urticae
Node of Origin (family) Protostomia
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587301.1: 4414906-4414965 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-87-o41)		 Mir-87-o41 HE587301.1: 4414906-4414965 [-] Ensembl
Mir-87-o40 HE587301.1: 4415090-4415158 [-] Ensembl
Mir-87-o39 HE587301.1: 4415225-4415289 [-] Ensembl
Mir-87-o38 HE587301.1: 4415425-4415497 [-] Ensembl
Seed UGAGCAA
Precursor
(pre-Mir +30nt flank)		 
UUUUUUUCUUAUUGAAACGUUACGUUGAACGUGCCUCUGACUUUGUCUCAGCCUCAGACAUGAUUAAGGUGAGCAAAGUUUCAGGUGUGUUUGGUGUAACUGGAUAAACAGCCUUAAAUU
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Structure
        10          20        30        40        50        60
UUUUUUUCUUAUUGAAAC--|     UU     UG   CU       U    G   CAGAC 
                    GUUACG  GAACG  CCU  GACUUUG CUCA CCU     A
                    CAAUGU  UUUGU  GGA  UUGAAAC GAGU GGA     U
UUAAAUUCCGACAAAUAGGU^     GG     GU   CU       -    -   AUUAG 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
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Star sequence

Tur-Mir-87-o41_5p*
mirBase accessionNone
Sequence 
0- GUGCCUCUGACUUUGUCUCAGCCU -24
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Mature sequence

Tur-Mir-87-o41_3p
mirBase accessionNone
Sequence 
38- GUGAGCAAAGUUUCAGGUGUGU -60
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