MirGeneDB 3.0

MirGeneDB ID

Tur-Mir-87-o38

Family name MIR-87 (all species)
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues Tur-Mir-87-o39  Tur-Mir-87-o40  Tur-Mir-87-o41 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) T. urticae
Node of Origin (family) Protostomia
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587301.1: 4415425-4415497 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-87-o38)
Mir-87-o41 HE587301.1: 4414906-4414965 [-] Ensembl
Mir-87-o40 HE587301.1: 4415090-4415158 [-] Ensembl
Mir-87-o39 HE587301.1: 4415225-4415289 [-] Ensembl
Mir-87-o38 HE587301.1: 4415425-4415497 [-] Ensembl
Seed UGAGCAA
Precursor
(pre-Mir +30nt flank)
ACUCGGCAAGUGUCAUCAUUGCGUUGAACGUGCCCGAUACUUUGUCUCAACCUGAGAGUUUUAAUCUUGCAAAUGAAAAAGGUGAGCAAAGUUUCAGGUGUGUUUGGUGUAAUUUGCAACUUCAUUGGGUGCA
Get precursor sequence
Structure
        10           20        30        40        50        60      
ACUCGGCAAGUGUCAUC---|     UU     UG  C  U      U    A   GAGAGUUUUAAU 
                    AUUGCG  GAACG  CC GA ACUUUG CUCA CCU            C
                    UAAUGU  UUUGU  GG CU UGAAAC GAGU GGA            U
ACGUGGGUUACUUCAACGUU^     GG     GU  A  U      -    -   AAAAGUAAACGU 
 130       120       110       100        90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Ad Ad Em To
Star sequence

Tur-Mir-87-o38_5p*

mirBase accessionNone
Sequence
0- UGCCCGAUACUUUGUCUCAACCUG -24
Get sequence
Mature sequence

Tur-Mir-87-o38_3p

mirBase accessionNone
Sequence
51- GUGAGCAAAGUUUCAGGUGUGU -73
Get sequence