MirGeneDB 3.0
MirGeneDB ID

Sro-Mir-12496-P1

Family name MIR-12496 (all species)
Species Roscoff worm (Symsagittifera roscoffensis)
MiRBase ID
Paralogues Sro-Mir-12496-P2  Sro-Mir-12496-P3 
Orthologues Hmi-Mir-12496  Xbo-Mir-12496 
Node of Origin (locus) S. roscoffensis
Node of Origin (family) Xenacoelomorpha
Genome context
(GCA_025153585.1_SymRos_1_5_genomic)		 JANVAR010000125.1: 175645-175709 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-12496-P1)		 Mir-12496-P3 JANVAR010000125.1: 175402-175458 [-] UCSC Ensembl
Mir-12496-P2 JANVAR010000125.1: 175530-175582 [-] UCSC Ensembl
Mir-12496-P1 JANVAR010000125.1: 175645-175709 [-] UCSC Ensembl
Seed UGUGCAU
Precursor
(pre-Mir +30nt flank)		 
GACAUUUUGUUCGAAACUCUUUCAGAAAAAUCCGCCAAAGACAUGAAUCAACAAAACCAUUUUGAGAGAAAUUGUUGUGCAUGCUUUGGUGGCUUUGUAAAAAGAGACGAAUCUUGUAUUUUAAA
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Structure
        10           20        30        40        50        60   
GACAUUUUGUUCGAAAC---|    CAGAA   U         A    AAU     AAACCAUUU 
                    UCUUU     AAA CCGCCAAAG CAUG   CAACA         \
                    AGAAA     UUU GGUGGUUUC GUAC   GUUGU         U
AAAUUUUAUGUUCUAAGCAG^    AAUG-   C         -    GU-     UAAAGAGAG 
   120       110       100         90         80         70
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Po
Star sequence

Sro-Mir-12496-P1_5p*
mirBase accessionNone
Sequence 
0- UCCGCCAAAGACAUGAAUCAACA -23
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Mature sequence

Sro-Mir-12496-P1_3p
mirBase accessionNone
Sequence 
44- UUGUGCAUGCUUUGGUGGCUU -65
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